Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0358
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subuni...    29   4.1  
At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subuni...    29   4.1  
At1g45403.1 68414.m05196 membrane protein                              28   7.2  
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    27   9.5  
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi...    27   9.5  

>At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subunit
           family protein similar to phosphatidyl inositol glycan
           class T (GI:14456615) [Homo sapiens]; contains Pfam
           profile PF04113: Gpi16 subunit, GPI transamidase
           component
          Length = 643

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 248 HICFHTEASISLSYGYHHHIHTRQMYN-VHQLNTKYIYLKILTSIWSH 388
           H  F   A  S S+G HHH+  + +   V +   K + L      W+H
Sbjct: 48  HFHFENRAPPSNSHGRHHHLFPKAISQLVQKFRVKEMELSFTQGRWNH 95


>At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subunit
           family protein similar to phosphatidyl inositol glycan
           class T (GI:14456615) [Homo sapiens]; contains Pfam
           profile PF04113: Gpi16 subunit, GPI transamidase
           component
          Length = 644

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 248 HICFHTEASISLSYGYHHHIHTRQMYN-VHQLNTKYIYLKILTSIWSH 388
           H  F   A  S S+G HHH+  + +   V +   K + L      W+H
Sbjct: 48  HFHFENRAPPSNSHGRHHHLFPKAISQLVQKFRVKEMELSFTQGRWNH 95


>At1g45403.1 68414.m05196 membrane protein
          Length = 169

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 425 KPT*RSL*IVRLQMTNNIMSYD----CLLTTFNISTNLY 529
           KP   S  + R+  TN  + YD    C+L   NI+ NLY
Sbjct: 11  KPVYESTSLFRIWWTNKNLQYDIVMTCILKILNIAANLY 49


>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 232 NTSCVPHLFSYRS*YFFKLWVSPSYTYKTNVQCTPIEYKVY 354
           N   VP  F+++S     +++SPSY+ +    C   + +VY
Sbjct: 421 NCVLVPEYFTHKSHAEHHVFISPSYSEENEALCQGCKKRVY 461


>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
           to importin alpha subunit (Karyopherin alpha subunit)
           (KAP alpha) SP:O22478 from [Lycopersicon esculentum]
          Length = 528

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 474 LFVICNLTIYKLLYVGLLFSSPDLYNEHRCDQIDVN 367
           L ++C   + K+L VG +FSS      ++C Q +VN
Sbjct: 416 LVMVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVN 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,969
Number of Sequences: 28952
Number of extensions: 268078
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)