Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K8Z8 Cluster: Putative uncharacterized protein; n=1; ...    32   2.1  
UniRef50_UPI0000E0EF11 Cluster: hypothetical protein OM2255_1521...    31   4.9  
UniRef50_Q8G5Q3 Cluster: Formate acetyltransferase; n=5; Actinob...    31   4.9  
UniRef50_Q8RCJ2 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_Q67LK0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_A2U867 Cluster: Periplasmic binding protein precursor; ...    30   8.6  

>UniRef50_A5K8Z8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 816

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 122 NACVISLMIPSECVDRNDTRSERVLNE*NSY 30
           NAC I+ + PS C  RND+R    + + N+Y
Sbjct: 712 NACQITCVPPSPCSTRNDSRMNHFIKQENNY 742


>UniRef50_UPI0000E0EF11 Cluster: hypothetical protein OM2255_15219;
           n=1; alpha proteobacterium HTCC2255|Rep: hypothetical
           protein OM2255_15219 - alpha proteobacterium HTCC2255
          Length = 541

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 16  SRGRPYEFYSFRTRSDRVSFRSTHSDGII 102
           +R RP  F+SF T SDRV   + ++DG++
Sbjct: 255 ARWRPNHFWSFNTNSDRVVDSAGNADGVM 283


>UniRef50_Q8G5Q3 Cluster: Formate acetyltransferase; n=5;
           Actinobacteridae|Rep: Formate acetyltransferase -
           Bifidobacterium longum
          Length = 804

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  FRSTHSDGIIKLITHALKIPKKNFLIRVRPDASQR 177
           +R TH+DG+  + T  +K+ + N ++   PDA  R
Sbjct: 163 YRKTHNDGVFGVYTKQIKVARHNKILTGLPDAYGR 197


>UniRef50_Q8RCJ2 Cluster: Putative uncharacterized protein; n=1;
           Thermoanaerobacter tengcongensis|Rep: Putative
           uncharacterized protein - Thermoanaerobacter
           tengcongensis
          Length = 161

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 4   DLRRSRGRPYEFYSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKN-FLIRVRPDASQRR 180
           DL+ S  R Y  Y +RT    + F         K+   A+ I K N  ++ + PD   RR
Sbjct: 75  DLKESNERNYANYDYRTNGYSIYFEGEKD---YKIYDLAIAISKDNPHVLEIFPDIINRR 131

Query: 181 IFSF 192
           +F +
Sbjct: 132 LFLY 135


>UniRef50_Q67LK0 Cluster: Putative uncharacterized protein; n=1;
           Symbiobacterium thermophilum|Rep: Putative
           uncharacterized protein - Symbiobacterium thermophilum
          Length = 337

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 261 TRIVRDCTAATTDASHSRPH*GRKRENTTLTCVGPDAYEKIFFRNFQRVRD 109
           TR+ R CT A T  + + P  GR R  T     G   + ++  R   RV +
Sbjct: 255 TRVSRKCTFAPTSGARAGPSPGRGRTETRAGTTGTKVHSRVNGRPSGRVHE 305


>UniRef50_A2U867 Cluster: Periplasmic binding protein precursor;
           n=2; Bacillus|Rep: Periplasmic binding protein precursor
           - Bacillus coagulans 36D1
          Length = 335

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 131 GIFNACVISLMIPSECVDRNDTRSERVLNE*NSYGL 24
           GIF  C+I+L++ + C +R  T SE+ +   ++Y L
Sbjct: 4   GIFAGCLIALLVLAGCGNRETTGSEKNMKSKSNYPL 39


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,596,037
Number of Sequences: 1657284
Number of extensions: 4020558
Number of successful extensions: 9125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9125
length of database: 575,637,011
effective HSP length: 73
effective length of database: 454,655,279
effective search space used: 10002416138
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)