Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   6.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    19   8.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 112 THALKIPKKNFLI 150
           TH L   KKNF++
Sbjct: 273 THLLDSEKKNFIV 285


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 212 ECDASVVAAVQSRTMRVCXNVCDDT 286
           EC+  +VA V +       N+C  T
Sbjct: 194 ECNDPLVALVVNENNTTVNNICQAT 218


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 116 CVISLMIPSECVDRNDTRS 60
           C++SL+I  +CV +   +S
Sbjct: 266 CLLSLIILCDCVVKEAQKS 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,832
Number of Sequences: 336
Number of extensions: 1011
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)