Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    23   6.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   6.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.8  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    23   8.8  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    23   8.8  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 232 DNRRVALASALRQETRKYD 176
           + ++V LASAL+  T KYD
Sbjct: 268 EKQKVDLASALKMLTTKYD 286


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 49  RTRSDRVSFRSTHSDGIIKLITHALKIPKKNFLI 150
           RT+ +  SF+    D ++      LK+ K NF +
Sbjct: 839 RTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQV 872


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 34  EFYSFRTRSDRVSFRSTHSDGIIKLITHAL 123
           EFY++ T   +      H DG+++ +T +L
Sbjct: 436 EFYAWLTYPWQTQILRLHLDGVVEDVTESL 465


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 158 RTRMRKFFLGIFNACVISLMIPS 90
           RT   KF++GIF+  +I  + PS
Sbjct: 58  RTYNSKFYMGIFDKEIIDNLPPS 80


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  RRSRGRPYEFYSFRTR 57
           RRS+G PYE Y  R +
Sbjct: 545 RRSQGNPYEGYRTRRK 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,082
Number of Sequences: 5004
Number of extensions: 17248
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)