Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0640 + 35230664-35231065,35231957-35232202                       30   0.34 
02_05_0551 + 29907768-29907909,29907995-29909280                       29   0.46 
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...    26   5.6  
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    26   5.6  
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109...    25   9.8  

>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 40  YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL-IRVRPDASQRRIFSF 192
           YS R R+ R    ST+ DGI  L+T+  K    + L +R+  D    R  SF
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSF 207


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 168 KSTSYFLVSCLSADASATRLLSQPCSLGLCVFV 266
           +S+SY  V C +A  S   L S  CS G C +V
Sbjct: 190 RSSSYSAVPCAAASCSQLALYSNGCSGGQCGYV 222


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 34  EFYSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFL 147
           EFYS + ++  ++F+  ++DG  K+   +LK   K+F+
Sbjct: 285 EFYSEKDKTYDLNFKEDNNDGSHKISGDSLKDVYKSFV 322


>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 22  GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 117
           G+   FYSF+T + +++F  + S   + LITH
Sbjct: 98  GQGCSFYSFKTNTYKLNFLESPSGIKLILITH 129


>12_02_0844 -
          23609783-23609926,23610014-23610331,23610771-23610926,
          23611068-23611318,23611384-23611530,23612450-23612501,
          23612628-23612763,23613507-23613538
          Length = 411

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 13 RSRGRPYEFYSFRTRSDR 66
          RSRGRPY   + R  SDR
Sbjct: 29 RSRGRPYSRQAVRPGSDR 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,498
Number of Sequences: 37544
Number of extensions: 108165
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)