Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   27   1.9  
SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)                  27   2.5  
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41)            26   4.4  
SB_56804| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   5.8  
SB_5494| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.8  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  

>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 253 SPRLHGCDNRRVALASALRQETRKYDVDLRR 161
           SP +      R  LA  LRQ T  Y+ +LRR
Sbjct: 484 SPEMEALVRERNDLARELRQRTEAYEAELRR 514


>SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)
          Length = 227

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 231 TTDASHSRPH*GRKRENTTLTCVGPDAY 148
           T D     PH  R R+   LTC  P++Y
Sbjct: 185 TADREKGSPHHTRIRDLENLTCTSPESY 212


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 129 NFQRVRD*FNDTVRMRGSERYAVRTCSKRIKLVRSPA 19
           N   +RD  N+T+RMR +E Y +R   KR+    SPA
Sbjct: 101 NTLHMRDNENNTLRMRDNENYTLR--MKRLCANCSPA 135


>SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41)
          Length = 531

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 4   DLRRS---RGRPYEFYSFRTRSDRVSFRSTHSDGIIKLITHALKIPK--KNFLIRVRPDA 168
           DLR+S   RGR Y FYS   RS       +  D  +  IT +  +PK   +  I + PD 
Sbjct: 17  DLRKSLQKRGRSYAFYS--ARSCLNGPEGSEKDSTLNKITSSPCLPKLPSSLEILILPDI 74

Query: 169 S 171
           S
Sbjct: 75  S 75


>SB_56804| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 345

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 165 RKSTSYFLVSCLSADASATRLLSQPCSLGLCV 260
           R  T+YFLVS  +AD   + +L+ PC L + V
Sbjct: 53  RTVTNYFLVSLAAADLLVS-MLTMPCWLTIRV 83


>SB_5494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 165 RKSTSYFLVSCLSADASATRLLSQPCSLGLCV 260
           R  T+YFLVS  +AD   + +L+ PC L + V
Sbjct: 53  RTVTNYFLVSLAAADLLVS-MLTMPCWLTIRV 83


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 161 GRTRMRKFFLGIFNAC-VISLMIPSECVDRNDTRSERVLNE 42
           GR + R FF+G F++  +IS+ +     D N+  S+   NE
Sbjct: 272 GRQKCRLFFIGFFSSLELISVDVDCNNNDDNNDHSDNNNNE 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,035,351
Number of Sequences: 59808
Number of extensions: 140813
Number of successful extensions: 294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)