Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0356
(287 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 27 1.6
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 27 1.6
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 27 1.6
M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein ( C.ele... 27 1.6
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 27 2.9
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 27 2.9
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 26 3.8
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 26 3.8
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 25 8.7
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 25 8.7
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 25 8.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 25 8.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 25 8.7
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 25 8.7
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 25 8.7
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 46 FRTRSDRVSFRSTHSDGIIKLITH-ALKIPKKNFLIRVRPDA 168
FRT + V S H+DG+I L+ + A K K L + P+A
Sbjct: 244 FRTLGELVHHHSVHADGLICLLMYPASKKDKGRGLFSLSPNA 285
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 46 FRTRSDRVSFRSTHSDGIIKLITH-ALKIPKKNFLIRVRPDA 168
FRT + V S H+DG+I L+ + A K K L + P+A
Sbjct: 249 FRTLGELVHHHSVHADGLICLLMYPASKKDKGRGLFSLSPNA 290
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 46 FRTRSDRVSFRSTHSDGIIKLITH-ALKIPKKNFLIRVRPDA 168
FRT + V S H+DG+I L+ + A K K L + P+A
Sbjct: 259 FRTLGELVHHHSVHADGLICLLMYPASKKDKGRGLFSLSPNA 300
>M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein (
C.elegans DNA homologousto the v-abl oncogene. ).
Length = 552
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 46 FRTRSDRVSFRSTHSDGIIKLITH-ALKIPKKNFLIRVRPDA 168
FRT + V S H+DG+I L+ + A K K L + P+A
Sbjct: 110 FRTLGELVHHHSVHADGLICLLMYPASKKDKGRGLFSLSPNA 151
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 162 RRKSTSYFLVSCLSADASATRLLSQPCSLGLC 257
RR T Y + CLS +PC L C
Sbjct: 51 RRAGTKYLRLKCLSVHCGEAARFCKPCRLKRC 82
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 162 RRKSTSYFLVSCLSADASATRLLSQPCSLGLC 257
RR T Y + CLS +PC L C
Sbjct: 36 RRAGTKYLRLKCLSVHCGEAARFCKPCRLKRC 67
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 43 SFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFLIRVRP 162
S +T R SF S H DG I L + + K ++V P
Sbjct: 157 SIQTHPKRTSFVSAHQDGSIILYNFSSRTQSKICTLQVPP 196
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 43 SFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFLIRVRP 162
S +T R SF S H DG I L + + K ++V P
Sbjct: 157 SIQTHPKRTSFVSAHQDGSIILYNFSSRTQSKICTLQVPP 196
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 37 FYSFRTRSDRVSFRSTHSDGIIKLI 111
F+S + +S+R ++R S G++KL+
Sbjct: 673 FHSLKKKSNRFTYRMGSSLGVVKLL 697
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 37 FYSFRTRSDRVSFRSTHSDGIIKLI 111
F+S + +S+R ++R S G++KL+
Sbjct: 673 FHSLKKKSNRFTYRMGSSLGVVKLL 697
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 28 PYEFYSFRTRSDRVSFRSTHSDG----IIKLITHALKIPKK 138
P E Y FR R+D +S SD ++K ++ ++ PKK
Sbjct: 27 PGESYRFRVRADNTFGQSEPSDESELVVVKNVSRVVEEPKK 67
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 28 PYEFYSFRTRSDRVSFRSTHSDG----IIKLITHALKIPKK 138
P E Y FR R+D +S SD ++K ++ ++ PKK
Sbjct: 27 PGESYRFRVRADNTFGQSEPSDESELVVVKNVSRVVEEPKK 67
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 28 PYEFYSFRTRSDRVSFRSTHSDG----IIKLITHALKIPKK 138
P E Y FR R+D +S SD ++K ++ ++ PKK
Sbjct: 15853 PGESYRFRVRADNTFGQSEPSDESELVVVKNVSRVVEEPKK 15893
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 28 PYEFYSFRTRSDRVSFRSTHSDG----IIKLITHALKIPKK 138
P E Y FR R+D +S SD ++K ++ ++ PKK
Sbjct: 15853 PGESYRFRVRADNTFGQSEPSDESELVVVKNVSRVVEEPKK 15893
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 37 FYSFRTRSDRVSFRSTHSDGIIKLI 111
F+S + +S+R ++R S G++KL+
Sbjct: 673 FHSLKKKSNRFTYRMGSSLGVVKLL 697
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 37 FYSFRTRSDRVSFRSTHSDGIIKLI 111
F+S + +S+R ++R S G++KL+
Sbjct: 673 FHSLKKKSNRFTYRMGSSLGVVKLL 697
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,786,850
Number of Sequences: 27780
Number of extensions: 98210
Number of successful extensions: 273
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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