Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0356
         (287 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    29   0.69 
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    27   2.8  
At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1) ...    25   8.4  
At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containi...    25   8.4  

>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 22  GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 117
           G+   F+SFRT + ++SF  T S   I L+TH
Sbjct: 88  GQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119


>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 253 SPRLHGCDNRRVALASALR 197
           +PR+  C NRR A A+A+R
Sbjct: 529 NPRIIACGNRRAAFAAAMR 547


>At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1)
           identical to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; supporting cDNA gi|20069031|gb|AF474076.1|;
           contains Pfam profiles PF03124: EXS family and PF03105:
           SPX domain
          Length = 782

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 155 TRMRKFFLGIFNACVISLMI 96
           + M  FF+G+F  C ISL +
Sbjct: 382 SHMVTFFVGLFTGCFISLFV 401


>At2g48000.1 68415.m06008 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 73  FRSTHSDGIIKLITHALKIPKKNF 144
           +RS H D I K+ T +  IPKK++
Sbjct: 190 YRSCHKDRIRKIKTLSKLIPKKSY 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,343,915
Number of Sequences: 28952
Number of extensions: 87305
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)