Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0355
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             31   1.3  
12_01_0861 + 8153108-8153266,8154633-8155136                           29   3.1  
06_01_0286 - 2094920-2097805                                           29   5.4  
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26...    29   5.4  
04_03_0506 + 16635334-16635520,16635639-16635856                       28   7.2  
01_06_0664 + 30999365-31002089,31002220-31002686                       28   9.5  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 179 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 54
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 55  PYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 210
           P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 94  PRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 309 SLILMNLDNFCRSHGQVPGRIFQMSALST 223
           +L L+NLD +C  HG +P  +  ++AL+T
Sbjct: 256 TLSLINLD-YCELHGSIPESVGNLTALNT 283


>02_01_0037 +
           261405-261779,261880-262065,262185-262271,262341-262420,
           262518-262599,262794-262814,263204-263249,263365-263483,
           263685-263798,263885-263959,264068-264157,264604-264713,
           264902-265160
          Length = 547

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 760 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRLYTLCFRLVCCVE 617
           G  I A G  G +P GK+ VSA QL    S +RH +   L  +LV  V+
Sbjct: 146 GHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEK--ALIIKLVDIVD 192


>04_03_0506 + 16635334-16635520,16635639-16635856
          Length = 134

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 567 VIMVIAVSFVKLLSAHNSTQHTSRKHKV*SLGCLMSELTHI----NCVALTARFPVGKP 731
           +++V+A   VK LS     +    KH+   +  + +E T +     CV L ARF V KP
Sbjct: 31  IVVVLATVDVKQLSGLKFLEAARMKHQDLQVIMMSAETTRLYTMMRCVKLAARFLVKKP 89


>01_06_0664 + 30999365-31002089,31002220-31002686
          Length = 1063

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 345 IKTNRRRASRPKSLILMNLDNFCRSHGQVPGRIFQMSALSTFDGSFCD 202
           + +NR     P SL  +NL++   S  Q+ G++    A+  +  SF D
Sbjct: 565 LSSNRLSGGIPSSLASLNLNSLNLSSNQLSGQVPAKFAIGAYARSFLD 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,021,585
Number of Sequences: 37544
Number of extensions: 483345
Number of successful extensions: 1263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)