Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0355
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   8.5  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 452 TDILSHSRYRLNTACTETCWLNL*DKH 532
           T++L H+R+ L  AC E C++++   H
Sbjct: 245 TEVLKHARFCLGLACCERCFIHIGQWH 271


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 580 MTMITNSSSVPPASSYMLVSKIKPACLSASRIKAIPRMAQ 461
           MT    S  +PPASS   +SKI P   +  R + I R+++
Sbjct: 200 MTFPDGSDVLPPASSEWHISKISPNLENKIRCRLIGRLSE 239


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 115 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 219
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 479 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 375
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,160
Number of Sequences: 27780
Number of extensions: 383278
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)