Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0354
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   0.68 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   2.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   4.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   4.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   4.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.4  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 464 TAYRSCSIQSFWPEVPEK 411
           T YR C+  S WP  P K
Sbjct: 26  TLYRDCTTASSWPGRPPK 43


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 343 HRRIKKQRRYERLAGTSQLSLWSFSGTSGQKL 438
           ++R   Q  YE+L     L LW   G S +KL
Sbjct: 231 YKRPHDQWAYEKLNVNDGLQLWVDYGCSPKKL 262


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 137 GAKLPSAGLC 108
           G ++PSAGLC
Sbjct: 103 GCEMPSAGLC 112


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 163 FMHVSERPVVRSYHPRDY 110
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 163 FMHVSERPVVRSYHPRDY 110
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 137 GAKLPSAGLC 108
           G ++PSAGLC
Sbjct: 51  GCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 137 GAKLPSAGLC 108
           G ++PSAGLC
Sbjct: 234 GCEMPSAGLC 243


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 122 MVASHHRTLGDVHEPN 169
           M A HH+  G  H P+
Sbjct: 347 MAAPHHQNFGPRHPPD 362


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 259 SKPSSRSLLMGEQSNAWRNKLRNDRKSRH 345
           S PS  S   G  S+ W N       SRH
Sbjct: 131 SDPSVSSCHQGFSSSTWCNYSAYSSASRH 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,704
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)