Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0354
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    27   2.2  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   3.8  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   5.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   6.6  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   6.6  

>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 406 TGITGLCQPSVHSDVAF*SFDVGSS 332
           TGI GLC P +H  V   +F VG S
Sbjct: 212 TGIAGLCIPIIHLSVG--NFPVGDS 234


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 346 DVGSSYHCEACFAKRWIVHPSKGNVSWV 263
           D+G S    +CF   + + PS G +S++
Sbjct: 229 DIGGSIRIPSCFQGLYALKPSTGRISYL 256


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 377 AWLAQASYPCGPFLAPLAKNSGYYRIDR----PCFRS 475
           +W +    P  PF+  LAK+  YY I++    PC+R+
Sbjct: 156 SWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRN 192


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 WHLWPKTLDTTGSIGRAFAVPMRTEH 494
           +H   + L+  GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 PNVRNCGSSRTEQYYYRNDKPSVG 235
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,855
Number of Sequences: 5004
Number of extensions: 42733
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)