Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0354
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1178 + 11178430-11178547,11179781-11179864,11179960-111800...    28   5.0  
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    28   5.0  
10_05_0041 - 8469769-8470164                                           27   6.6  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   6.6  
07_03_0414 + 17892133-17893590                                         27   6.6  
01_06_0347 + 28592552-28593502                                         27   8.8  
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638...    27   8.8  

>07_01_1178 +
           11178430-11178547,11179781-11179864,11179960-11180001,
           11180101-11180148,11180437-11180520,11180609-11180668,
           11180745-11180792,11180899-11180984
          Length = 189

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 271 SRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGTSQLSLWSFSGTSGQKLWILQ 450
           S  L M ++      K  + +KS+  +I KQ   +  AGTS  S+ S SGT  + L I  
Sbjct: 49  SNVLKMADEKQFEAGKTSSGKKSQGLKIMKQLAGKIEAGTSTNSVNSKSGTEEKILKISN 108

Query: 451 D 453
           D
Sbjct: 109 D 109


>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 212 DSNTAQYERNRSFGHLVHARLRASGGAKLPS 120
           D+N A+ ++ +SF HLV    R S  +K P+
Sbjct: 164 DTNKAEEQQLKSFAHLVFPNSRKSASSKEPN 194


>10_05_0041 - 8469769-8470164
          Length = 131

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 268 SSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGTSQLSLWSFSGT 423
           SS ++  GE+   W++ LR+D K++ R ++     ER  G S+L  W  + T
Sbjct: 43  SSTTIDDGERRR-WQDGLRDDLKNKMREVR-----EREGGRSELGRWPKAAT 88


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  RLGWLRP*RRSGIIP 118
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 254 HGLNPAHVPF*WVNNPTL-GETSFAMIGRADIEGSKSNVAMNAWLAQ 391
           HGL  A  PF WV  P + G +  A +  A     KS   +  W  Q
Sbjct: 305 HGLVAAGYPFLWVLRPDMVGASQSAALREAVAAAGKSKARVVEWAPQ 351


>01_06_0347 + 28592552-28593502
          Length = 316

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 476 DCESTAYRSCSIQSFWPEVPEKDHRDNWL 390
           DC S   ++C     WP++P +    NWL
Sbjct: 238 DCGSCGKKAC----MWPQIPNEKREINWL 262


>01_06_0091 -
           26363070-26363361,26363467-26363625,26363708-26363880,
           26366639-26366810,26366912-26367294
          Length = 392

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 347 EGSKSNVAMNAWLAQASYPCGPFLAPLAKNSGYYRIDRPCF 469
           EGS+S       +A ++YP GP  A  A  S    + +P F
Sbjct: 302 EGSRSCAQQTQPVAGSAYPAGPVPAQSAVRSAIAGMSKPVF 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,109
Number of Sequences: 37544
Number of extensions: 307685
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)