Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0354
(511 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 58 1e-08
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 30 5.4
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 30 5.4
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 30 5.4
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 30 5.4
AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein. 29 7.1
AL080186-1|CAB45767.1| 299|Homo sapiens hypothetical protein pr... 29 7.1
AF314185-1|AAL76164.1| 283|Homo sapiens SR rich protein protein. 29 7.1
AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein. 29 7.1
BC073938-1|AAH73938.1| 366|Homo sapiens RBBP6 protein protein. 29 9.4
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular... 29 9.4
AY040874-1|AAK74139.1| 256|Homo sapiens C21orf57 isoform B prot... 29 9.4
AY040873-1|AAK74138.1| 299|Homo sapiens C21orf57 isoform A prot... 29 9.4
AL359564-1|CAB94869.1| 529|Homo sapiens hypothetical protein pr... 29 9.4
AK026954-1|BAB15600.1| 628|Homo sapiens protein ( Homo sapiens ... 29 9.4
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential... 29 9.4
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ... 29 9.4
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ... 29 9.4
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +2
Query: 326 MIGRADIEGSKSNVAMNAWLAQASYPCGPF 415
MIGRADIEGSKS+VAMNAW QASYPCG F
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNF 30
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 29.9 bits (64), Expect = 5.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 211 SQRQAISRVKLTCLTRSKPSSRSLLMGEQSNA-WRNKLRNDRKSR-HRRIKKQRRYERLA 384
S+ ++IS+ + +RSK SRS G +S + ++K ++DR S H R + + YE+
Sbjct: 214 SRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSR 273
Query: 385 GTSQ 396
S+
Sbjct: 274 SRSR 277
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 29.9 bits (64), Expect = 5.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 211 SQRQAISRVKLTCLTRSKPSSRSLLMGEQSNA-WRNKLRNDRKSR-HRRIKKQRRYERLA 384
S+ ++IS+ + +RSK SRS G +S + ++K ++DR S H R + + YE+
Sbjct: 214 SRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSR 273
Query: 385 GTSQ 396
S+
Sbjct: 274 SRSR 277
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 29.9 bits (64), Expect = 5.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 211 SQRQAISRVKLTCLTRSKPSSRSLLMGEQSNA-WRNKLRNDRKSR-HRRIKKQRRYERLA 384
S+ ++IS+ + +RSK SRS G +S + ++K ++DR S H R + + YE+
Sbjct: 214 SRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSR 273
Query: 385 GTSQ 396
S+
Sbjct: 274 SRSR 277
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 29.9 bits (64), Expect = 5.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 211 SQRQAISRVKLTCLTRSKPSSRSLLMGEQSNA-WRNKLRNDRKSR-HRRIKKQRRYERLA 384
S+ ++IS+ + +RSK SRS G +S + ++K ++DR S H R + + YE+
Sbjct: 214 SRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSR 273
Query: 385 GTSQ 396
S+
Sbjct: 274 SRSR 277
>AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein.
Length = 805
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 214 QRQAISRVKLTCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYER 378
+R + SR RS+ S S + +SN R K+R+ R+S I+++RR R
Sbjct: 556 KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610
>AL080186-1|CAB45767.1| 299|Homo sapiens hypothetical protein
protein.
Length = 299
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 214 QRQAISRVKLTCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYER 378
+R + SR RS+ S S + +SN R K+R+ R+S I+++RR R
Sbjct: 50 KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 104
>AF314185-1|AAL76164.1| 283|Homo sapiens SR rich protein protein.
Length = 283
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 214 QRQAISRVKLTCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYER 378
+R + SR RS+ S S + +SN R K+R+ R+S I+++RR R
Sbjct: 34 KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 88
>AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein.
Length = 805
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 214 QRQAISRVKLTCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYER 378
+R + SR RS+ S S + +SN R K+R+ R+S I+++RR R
Sbjct: 556 KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610
>BC073938-1|AAH73938.1| 366|Homo sapiens RBBP6 protein protein.
Length = 366
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 285 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 327
>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
protein PACT protein.
Length = 1625
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 1544 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 1586
>AY040874-1|AAK74139.1| 256|Homo sapiens C21orf57 isoform B protein
protein.
Length = 256
Score = 29.1 bits (62), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 461 AYRSCSIQSFWPEVPEKDHRDNWLVP 384
++RS ++SFWP+ HR + L+P
Sbjct: 90 SFRSARLESFWPDSAASFHRPSLLLP 115
>AY040873-1|AAK74138.1| 299|Homo sapiens C21orf57 isoform A protein
protein.
Length = 299
Score = 29.1 bits (62), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 461 AYRSCSIQSFWPEVPEKDHRDNWLVP 384
++RS ++SFWP+ HR + L+P
Sbjct: 90 SFRSARLESFWPDSAASFHRPSLLLP 115
>AL359564-1|CAB94869.1| 529|Homo sapiens hypothetical protein
protein.
Length = 529
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 448 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 490
>AK026954-1|BAB15600.1| 628|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23301 fis, clone HEP11120. ).
Length = 628
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 547 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 589
>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
potential-related protein protein.
Length = 1616
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 1535 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 1577
>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
protein 6 isoform 2 protein.
Length = 1758
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 1677 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 1719
>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
protein 6 isoform 1 protein.
Length = 1792
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 253 TRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGT 390
TRS SS S + S + K + K +H++ KK +++++ AGT
Sbjct: 1711 TRSHSSSASSAESQDS---KKKKKKKEKKKHKKHKKHKKHKKHAGT 1753
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,323,917
Number of Sequences: 237096
Number of extensions: 1694827
Number of successful extensions: 3092
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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