Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0354
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF106584-2|AAC78222.2|  316|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 265 PSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKK-QRRYERLAGTSQLSLWSFSGTS 426
           P+ +S  MG++S+    K++  +KS+H + KK + R E  +G S  ++ +  G+S
Sbjct: 230 PADKSSRMGKRSSKIP-KIKKSKKSKHHKKKKRKSRSEDTSGNSSPTVIATDGSS 283


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 454 DPVVSRVFGQRCQKRTTGITGLCQPSVHSDVAF*SFDVGSSYHCEAC 314
           +P+ S   G+ CQ++  G   + + + H D+    +D+ S      C
Sbjct: 55  EPMTSTCEGENCQRKIMGNAEILRTACHHDICQHCYDLASRKEKSCC 101


>AF106584-2|AAC78222.2|  316|Caenorhabditis elegans Hypothetical
           protein F54A5.3a protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 481 IGTAKARPIDPVVSRVFGQ 425
           +G   AR I+PVVSRV G+
Sbjct: 56  VGVTAAREINPVVSRVIGE 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,168,004
Number of Sequences: 27780
Number of extensions: 244324
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)