Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0354
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16020.2 68414.m01922 expressed protein                             31   0.60 
At1g16020.1 68414.m01921 expressed protein                             31   0.60 
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    30   0.79 
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide...    29   1.8  
At3g05270.1 68416.m00575 expressed protein similar to endosome-a...    29   1.8  
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99...    29   2.4  
At3g17030.1 68416.m02174 expressed protein                             29   2.4  
At1g35880.1 68414.m04457 hypothetical protein                          27   5.5  
At5g19120.1 68418.m02275 expressed protein low similarity to ext...    27   7.3  
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    27   7.3  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    27   7.3  
At2g36420.1 68415.m04471 expressed protein                             27   9.7  
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    27   9.7  
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    27   9.7  

>At1g16020.2 68414.m01922 expressed protein
          Length = 502

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 244 TCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGTSQLSLWSFSG- 420
           T ++RS PS +   + ++S    NKLR +  S   R K Q +   +   ++ ++W  +  
Sbjct: 404 TKVSRSSPSGKVTTLAKESLLALNKLREEVDSEKSRAKGQEKDMEICIRAKNNVWVIARV 463

Query: 421 TSGQKLWILQDR 456
           T G++L++  ++
Sbjct: 464 TRGKELYMALEK 475


>At1g16020.1 68414.m01921 expressed protein
          Length = 515

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 244 TCLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGTSQLSLWSFSG- 420
           T ++RS PS +   + ++S    NKLR +  S   R K Q +   +   ++ ++W  +  
Sbjct: 417 TKVSRSSPSGKVTTLAKESLLALNKLREEVDSEKSRAKGQEKDMEICIRAKNNVWVIARV 476

Query: 421 TSGQKLWILQDR 456
           T G++L++  ++
Sbjct: 477 TRGKELYMALEK 488


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -3

Query: 284  KRERELGLDRVRQVSFTLLMACRCDSNTAQYERNRS----FGHLVHARLRASGGAKL 126
            K  R+L + ++R++   L+ A +C S   QY   R     F H ++ ++RASGG  L
Sbjct: 1572 KEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGINCKVRASGGCVL 1628


>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
           identical to pseudo-response regulator 5 GI:10281006
           from [Arabidopsis thaliana]
          Length = 667

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +2

Query: 155 VHEPNVRNCGSSRTEQYYYRNDKPSVG*N*PVSHGLNPAHVPF*WVNNPTLGETSFAMIG 334
           VH P    C +S       +N   S   N  + +  N +  P    N P   +TSF    
Sbjct: 436 VHRPLQTQCSASPVVTDQRKNVAASQDDNIVLMNQYNTSEPP---PNAPRRNDTSFYT-- 490

Query: 335 RADIEGSKSNVAMNAWLAQASYP 403
            AD  G   +  +N+W  Q+SYP
Sbjct: 491 GADSPGPPFSNQLNSWPGQSSYP 513


>At3g05270.1 68416.m00575 expressed protein similar to
           endosome-associated protein (EEA1) (GI:1016368) [Homo
           sapiens]; similar to smooth muscle myosin heavy chain
           (GI:4417214) [Homo sapiens; contains Pfam profile
           PF05911: Plant protein of unknown function (DUF869)
          Length = 615

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 238 KLTCLTRSKPS---SRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRYERLAGTSQLSLW 408
           KL  L  S+P    S S    E+SNA  N+L+++ K+  RRI +      +    +L L 
Sbjct: 314 KLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLE 373

Query: 409 SFSGTSGQKLWILQDR 456
                S +++  LQ R
Sbjct: 374 MALNGSKEQIEALQSR 389


>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 367

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 241 LTCLTRSKPSSRSLLMG---EQSNAWRNKLRNDRKSRHRRIKKQRRYER 378
           +T L  +   S +L++G    +SN W  +   +RKS H   K+Q  YE+
Sbjct: 25  ITSLREAGLESSNLILGIDFTKSNEWTGRYSFNRKSLHAIGKRQNPYEK 73


>At3g17030.1 68416.m02174 expressed protein
          Length = 648

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 229 SRVKLTCLTRSKPSSRSLLMGEQSNAW--RNKLRNDRKSRH--RRIKKQRRYERLAGT 390
           SR+  TC   S   + ++L+ + S AW  +NK    +K      ++KK  R  RLA T
Sbjct: 66  SRILKTCTAYSSGVTAAILLSDLSQAWHEQNKPGMSKKKPELIDQLKKGHRRRRLANT 123


>At1g35880.1 68414.m04457 hypothetical protein
          Length = 222

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 356 KSNVAMNAWLAQASYPCGPFLAPLAKNSGYYRIDRPCFRSPYAY*TSGS 502
           +S ++ + W ++ S     FL+PL     + R  RP +R P AY T+ S
Sbjct: 11  RSTLSTHFWFSRISQNL--FLSPL--RHAHNRPQRPAYRGPIAYTTASS 55


>At5g19120.1 68418.m02275 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}
          Length = 386

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 247 CLTRSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQR 366
           C +R   SSR+L+ G  S   + K+ N+R S     +K +
Sbjct: 73  CSSRHVSSSRNLISGSSSGCLKAKVGNERVSSSSSSRKDQ 112


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 RSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRY 372
           +SK S+++   G+ S+    + R  ++S  +RIK++RRY
Sbjct: 190 KSKKSNKNFSPGDVSDREAKETRK-KESNEKRIKRKRRY 227


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 RSKPSSRSLLMGEQSNAWRNKLRNDRKSRHRRIKKQRRY 372
           +SK S+++   G+ S+    + R  ++S  +RIK++RRY
Sbjct: 190 KSKKSNKNFSPGDVSDREAKETRK-KESNEKRIKRKRRY 227


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 331 RKSRHRRIKKQRRYERLAGTSQLSL 405
           ++++ R +KK RR+E+LAG   + L
Sbjct: 287 QRAKRRLLKKLRRFEKLAGLDPVEL 311


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 365 VAMNAWLAQASYPCGPFLAPLAK 433
           VA+++W  Q+ YP G ++ P+ K
Sbjct: 400 VAVDSWDRQSRYPSGHYVRPIGK 422


>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 116 PRMVASHHRTLGDVHEPNVRNCGSSRTEQYYYRN 217
           P  VA+H RT+G +H P        +T Q+  +N
Sbjct: 49  PAAVATHTRTIGIIHPPPDIRTIVEKTAQFVSKN 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,010
Number of Sequences: 28952
Number of extensions: 236049
Number of successful extensions: 555
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)