Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0353
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   1.1  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   6.0  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.0  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   7.9  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 24/100 (24%), Positives = 45/100 (45%)
 Frame = -1

Query: 374 GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARWLRP*RRSGIIPRMVVRTTG 195
           G++ R+  +  E  L + H   P  S  +T S  +    +W     +S I   +  R + 
Sbjct: 92  GIKDRIPVYYEEEELPEPHVTSPTKSEFATTSTCM----KWSSKTTKSEI--EVEWRDSY 145

Query: 194 RSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGL 75
             A C+ ++ ++  P   S +T  ++SHQ G ++ S   L
Sbjct: 146 LDANCIKEIIDSRRPSFASLLTKKSSSHQ-GSSHSSQPSL 184


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 174 PNVRNCGSSRTEQYYYRNDKPSVG 103
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 378 WIAEIDAIGFFLNTCITAPKSGYNSVRCRG 467
           W++++ A+    N+ ++ PKS ++ ++ RG
Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRG 133


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 216 DGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 121
           DG S  +PL  V E +  N G  +T   YY N
Sbjct: 191 DGGSK-QPLSDVDEDSYYNWGGKKTSAQYYVN 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,422
Number of Sequences: 5004
Number of extensions: 40485
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)