Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0353
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 0.85
11_01_0801 - 7071455-7071847 29 2.0
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 28 4.5
07_03_0846 - 21983581-21986055 28 4.5
05_07_0054 + 27368832-27369287 28 4.5
04_04_1222 - 31848892-31849347 28 4.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.0
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 27 6.0
10_08_0500 - 18357828-18358649 27 7.9
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 7.9
01_05_0118 + 18335065-18335553 27 7.9
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 247 RSHLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 384
R+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 429 RAAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>11_01_0801 - 7071455-7071847
Length = 130
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 216 PRDYA*TPLRPKPPSRIRQGYAHCGAPRVG 305
PR A +PLRP PP R R G H P G
Sbjct: 46 PRFGADSPLRPAPPPRRRLGLPHPQPPYSG 75
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 189 RAAGGANYHPRDYA*TPLRPKPPSRIRQGYAHCGAPRVGR 308
R+AG + + D P P P S R A CG R R
Sbjct: 25 RSAGSSTHRSHDLDDGPAPPSPESSCRSNAAVCGCARCRR 64
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 392 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 255
DL+D G +R +C+T S PD S VS+ LPD+A+
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQ 369
>05_07_0054 + 27368832-27369287
Length = 151
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 216 PRDYA*TPLRPKPPSRIRQGYAHCGAPRVG 305
PR A PLRP PP R R G H P G
Sbjct: 67 PRFGADGPLRPAPPPRRRLGLPHPQPPYSG 96
>04_04_1222 - 31848892-31849347
Length = 151
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 216 PRDYA*TPLRPKPPSRIRQGYAHCGAPRVG 305
PR A PLRP PP R R G H P G
Sbjct: 67 PRFGADGPLRPTPPPRRRLGLPHPQPPYSG 96
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 269 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 373
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 27.5 bits (58), Expect = 6.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 381 SKWASTSRLAF*MRNATSKVTLFRASRLSGLHSEHILAGFG*VASAL----EAFRHNPAD 214
++W + A +R+ V L S + LAG G +A AL EA R +PA+
Sbjct: 223 NEWYKKGKHAEALRHYDRAVALCPESAACRGNRAAALAGLGRLADALRDCEEAVRLDPAN 282
Query: 213 GSSHHRPLG 187
G +H R G
Sbjct: 283 GRAHSRLAG 291
>10_08_0500 - 18357828-18358649
Length = 273
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = -3
Query: 222 PADGSSH--HRPLGRVHEPNVRNCGSSRTEQYYYRN 121
P G H H PL R CGS+ T+ YY N
Sbjct: 86 PRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNN 121
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 301 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 399
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 259 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 387
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,601
Number of Sequences: 37544
Number of extensions: 302464
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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