Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0353
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF048704-1|AAC21457.1|  589|Homo sapiens lamin B receptor homolo...    29   6.5  
AF023676-1|AAC21450.1|  589|Homo sapiens lamin B receptor homolo...    29   6.5  

>AF048704-1|AAC21457.1|  589|Homo sapiens lamin B receptor homolog
           TM7SF2 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/84 (27%), Positives = 31/84 (36%)
 Frame = +1

Query: 145 TRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSHLAESGKDMLTVEPRESGGSKQCD 324
           TRG A   +W   + E PV+    RG M      R      G   L   P +  G ++  
Sbjct: 12  TRGFAAKGVWRGRAEEGPVLGAAERGFMVSTGSRRRVFEGPGGGGLRWTPGKGTGRQRGA 71

Query: 325 FTSRVSHSKRETRRRSPFGSRRSM 396
           +  R     R      P GSRR +
Sbjct: 72  WGPRAEDGVRRRTLGMPRGSRRDV 95


>AF023676-1|AAC21450.1|  589|Homo sapiens lamin B receptor homolog
           TM7SF2 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 23/84 (27%), Positives = 31/84 (36%)
 Frame = +1

Query: 145 TRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSHLAESGKDMLTVEPRESGGSKQCD 324
           TRG A   +W   + E PV+    RG M      R      G   L   P +  G ++  
Sbjct: 12  TRGFAAKGVWRGRAEEGPVLGAAERGFMVSTGSRRRVFEGPGGGGLRWTPGKGTGRQRGA 71

Query: 325 FTSRVSHSKRETRRRSPFGSRRSM 396
           +  R     R      P GSRR +
Sbjct: 72  WGPRAEDGVRRRTLGMPRGSRRDV 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,767,269
Number of Sequences: 237096
Number of extensions: 1606108
Number of successful extensions: 3216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3216
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)