Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0353
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical pr... 31 0.58
AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like ... 31 0.58
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 29 1.8
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 29 2.3
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF040661-12|AAG24221.1| 210|Caenorhabditis elegans Hypothetical... 28 3.1
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical
protein C41G7.2 protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 308 PPDSRGSTVSISLPDSARWLRP*RRSGIIPRMVVRTTGRSAECMNQMSE 162
PP ++ ST + SL S RP + I+P V R+A+ +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167
>AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like
protein protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 308 PPDSRGSTVSISLPDSARWLRP*RRSGIIPRMVVRTTGRSAECMNQMSE 162
PP ++ ST + SL S RP + I+P V R+A+ +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 334 RVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFD 459
R S S++++RRR+ RR ++ + ++ LRS TQF+
Sbjct: 378 RTSSSRQKSRRRNSKSQRRPLVLTKNVNKSHSLRSRRFTQFE 419
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 288 HSEHILAGFG*VASALEAFRHNPADGSSHHRP 193
+S+HI V ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 288 HSEHILAGFG*VASALEAFRHNPADGSSHHRP 193
+S+HI V ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 295 RESGGSKQCDFTSRVSHSKRET---RRRSPFGSRRSMLSVFFLTRASRLRSPDITQFDVG 465
RES S D +S ++K++ ++R+ FG +R + ++ T+ S PD D
Sbjct: 295 RESDCSGNEDDSSNAKYAKKQVFKKKKRNAFGKKRELAAILDHTKPSEHSEPDYVAPDNS 354
Query: 466 A 468
A
Sbjct: 355 A 355
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 295 RESGGSKQCDFTSRVSHSKRET---RRRSPFGSRRSMLSVFFLTRASRLRSPDITQFDVG 465
RES S D +S ++K++ ++R+ FG +R + ++ T+ S PD D
Sbjct: 341 RESDCSGNEDDSSNAKYAKKQVFKKKKRNAFGKKRELAAILDHTKPSEHSEPDYVAPDNS 400
Query: 466 A 468
A
Sbjct: 401 A 401
>AF040661-12|AAG24221.1| 210|Caenorhabditis elegans Hypothetical
protein W10G11.14 protein.
Length = 210
Score = 28.3 bits (60), Expect = 3.1
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 152 EPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEAT*PNPARICSLWSPESR-EALNNVTL 328
EP ++ F RPSG WC AG NA KA+A A +L +++ EAL T
Sbjct: 41 EPGWKFFN---RPSGGWCMRVFAG--FNAKKADAEKSCQAVGSTLSGIQNKNEALYIQTA 95
Query: 329 LVAFRIQNARRDVEAHLDRGDRCYR 403
L+A +I + V + R +C +
Sbjct: 96 LLA-QIPQSSGSVWIGIQRTQKCLK 119
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 185 RPSGRWCELPSAGLCLNASKAEAT*PNPARICSLWSPESREALNNVT 325
RPSG WC GL L ++ EA+ A L +++ LN +T
Sbjct: 35 RPSGPWCVKLFVGLYLQGNRNEASARCAAEGAVLSGVQNQAELNAMT 81
>Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical
protein F08G5.7 protein.
Length = 401
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 200 WCELPSAGLCLNASKAEAT*PNPARICSLWSPESREA 310
W + P G C S AE+ IC +P++ A
Sbjct: 77 WHQFPDTGCCYRVSDAESEWHGGTAICKALNPDAEMA 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,518,408
Number of Sequences: 27780
Number of extensions: 235022
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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