Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0353
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 206 RTTGRSAECMNQMSETAVPLVLSS 135
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12  IAKKFAKRWIVHP 50
           I +K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12  IAKKFAKRWIVHP 50
           I +K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12  IAKKFAKRWIVHP 50
           I +K A  W++HP
Sbjct: 71  IRQKAAGHWVIHP 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,932
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)