Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0353
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26190.1 68417.m03770 expressed protein                             28   2.9  
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c...    27   8.8  

>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 345  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYN 449
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 255

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 LVHALGRAAGGANYHPRDYA*TPLRPKPPS 260
           +V   G ++GGAN   R +  TP +P  PS
Sbjct: 10  VVFPSGGSSGGANVQQRRFPATPFQPPRPS 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,033,197
Number of Sequences: 28952
Number of extensions: 227840
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)