Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0352
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   6.3  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   6.3  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    25   8.4  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +2

Query: 254 PVREEPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 433
           P R    + T G+ + PSG    L S+ L  ++  A  SL ES  +  T     S   + 
Sbjct: 179 PTRSSFSYNTVGAASLPSGGLSNL-SSSLRSSSKSAGFSLFESASNSFT----PSSFIES 233

Query: 434 CDFTSRVSHSKRETRRRSPFGSRRS 508
            +  S    S+R     +P G+R S
Sbjct: 234 ANMESLSIPSRRRPSSIAPIGTRPS 258


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 565 ELYPDFGAVMHVLRKKPIARSPRSKW 488
           EL PD+   M VL K+   R  RS+W
Sbjct: 186 ELLPDYSPDMSVLDKRSHPRPLRSEW 211


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 369 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 277
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 369 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 277
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 369 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTGSITIATTSHQ 223
           LA   +A R+NP+ G+ H R   R+    VR     +T    IA  + Q
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQ 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,535
Number of Sequences: 5004
Number of extensions: 49223
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)