Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0352
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0414 + 17892133-17893590                                         31   0.92 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   0.92 
07_03_0846 - 21983581-21986055                                         29   2.1  
06_01_0655 + 4742267-4742531,4743313-4744136                           29   2.8  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.8  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.6  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   8.6  

>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 255 GSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GESLFAMIGRADIEGSKSNVAM 79
           GS+T+ +       T   H GL+ A  PF WV  P + G S  A +  A     KS   +
Sbjct: 290 GSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREAVAAAGKSKARV 345

Query: 78  NAWLPQ 61
             W PQ
Sbjct: 346 VEWAPQ 351


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +2

Query: 365 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 499
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 507 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 358
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -1

Query: 507 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 331
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     + + A
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHA 183

Query: 330 DGSSHHRPLGRVHE-PNVRNCGS 265
           + SS + P   + E P V + G+
Sbjct: 184 EPSSMNMPAFSIEEKPAVMSAGN 206


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 7   YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 114
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 377 RLGWLRP*RRSGIIP 333
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 384 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 488
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,839
Number of Sequences: 37544
Number of extensions: 360205
Number of successful extensions: 1013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)