Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0352
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 456 RIQNARRDVEAHLDRGDRAIGFF 524
           ++Q     VEAHL +G  AIG +
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAY 202


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 488 PFGSRRSCYRFFS*HVHHGSEVRI*LSSMSGLGIV 592
           P   +R CY+    H+   S   I  + +S LGIV
Sbjct: 494 PHEDKRGCYQLAINHIRWNSAFAIAPAVISCLGIV 528


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 488 PFGSRRSCYRFFS*HVHHGSEVRI*LSSMSGLGIV 592
           P   +R CY+    H+   S   I  + +S LGIV
Sbjct: 584 PHEDKRGCYQLAINHIRWNSAFAIAPAVISCLGIV 618


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 320 RTTGRSAECMNQMSETAVPLVL 255
           +  G+  +C N MSE  V ++L
Sbjct: 170 KENGKEFDCHNYMSELTVDILL 191


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 207 LSHDGLIPAHVPF*WVNNPT 148
           +SH   +  HVP  W+  PT
Sbjct: 694 VSHTQRLVVHVPPRWIVEPT 713


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,585
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)