Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0350
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T8Q1 Cluster: SD07787p; n=8; Endopterygota|Rep: SD077...    44   0.003
UniRef50_Q98S64 Cluster: Putative uncharacterized protein orf479...    38   0.19 
UniRef50_UPI0001509F25 Cluster: cyclic nucleotide-binding domain...    36   0.78 
UniRef50_Q75JR6 Cluster: Similar to Dictyostelium discoideum (Sl...    35   1.4  
UniRef50_Q1G8R7 Cluster: Putative uncharacterized protein; n=2; ...    33   7.3  
UniRef50_Q87M61 Cluster: Aldose 1-epimerase; n=5; Gammaproteobac...    32   9.6  
UniRef50_A6BZ31 Cluster: Probable NADH-dependent dehydrogenase; ...    32   9.6  

>UniRef50_Q8T8Q1 Cluster: SD07787p; n=8; Endopterygota|Rep: SD07787p
           - Drosophila melanogaster (Fruit fly)
          Length = 699

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = -2

Query: 618 VLRHGGAVPPQVLLKDYLEMEITPQTLASALIDELD 511
           +L HGGAVP + L+ ++L+ E+TP  LA +LI E+D
Sbjct: 650 ILAHGGAVPSRKLVANFLQREMTPSVLADSLITEID 685


>UniRef50_Q98S64 Cluster: Putative uncharacterized protein orf479;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf479 - Guillardia theta (Cryptomonas phi)
          Length = 479

 Score = 37.9 bits (84), Expect = 0.19
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = -3

Query: 386 LVNDY---KHI-ICLTNESGLDSLIYPLSKRNTFLVNE*SNTNN*TRIMIVSIHKQEVHI 219
           L ND+   KHI +C+  +    S I     +NTFL N    TNN T I I+ I + ++  
Sbjct: 249 LRNDFSFKKHIKLCINRKF---SFINAKKIKNTFLDN--IKTNNFTIIKILEIKEIKIDK 303

Query: 218 VWVAKPDMHRYIRLTLLVIYFTEISK 141
            W+ K     Y++  L+VI+F  I+K
Sbjct: 304 SWLIKIFKMEYLKFFLIVIHFIRINK 329


>UniRef50_UPI0001509F25 Cluster: cyclic nucleotide-binding domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: cyclic nucleotide-binding domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1997

 Score = 35.9 bits (79), Expect = 0.78
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 482  KDTGQKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNESGLDSLIYPLSKRN 303
            K+  +K+  PL N N+   I         P+SL+N Y+      NE  ++ +   LSK N
Sbjct: 1807 KNLAKKINMPLLNPNEQFTIKQKKRINVDPLSLLNQYQQFSKQENEKLIEQIKAILSKNN 1866

Query: 302  TF 297
             F
Sbjct: 1867 NF 1868


>UniRef50_Q75JR6 Cluster: Similar to Dictyostelium discoideum (Slime
           mold). Histidine kinase A; n=2; Dictyostelium
           discoideum|Rep: Similar to Dictyostelium discoideum
           (Slime mold). Histidine kinase A - Dictyostelium
           discoideum (Slime mold)
          Length = 1779

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 25/74 (33%), Positives = 34/74 (45%)
 Frame = -3

Query: 488 RAKDTGQKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNESGLDSLIYPLSK 309
           R  D G+KVT P    NQ +HI     S + P    N  K ++   +E GL+ LI   + 
Sbjct: 607 RISDHGEKVTSPSALMNQHNHIISPTTSPSKPPK--NRSKLLMSNYHEDGLNELINSNNN 664

Query: 308 RNTFLVNE*SNTNN 267
            N    N  +N NN
Sbjct: 665 NNNNNNNNNNNNNN 678


>UniRef50_Q1G8R7 Cluster: Putative uncharacterized protein; n=2;
           Lactobacillus delbrueckii subsp. bulgaricus|Rep:
           Putative uncharacterized protein - Lactobacillus
           delbrueckii subsp. bulgaricus (strain ATCC 11842 /
           DSM20081)
          Length = 120

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 386 LVNDYKHIICLTNESGLDSLIYPLSKRNTFLVNE 285
           L  D KH   L  ESG+D+ +Y LSK++  LVN+
Sbjct: 75  LFRDKKHYSLLRIESGIDADLYKLSKKSKKLVNK 108


>UniRef50_Q87M61 Cluster: Aldose 1-epimerase; n=5;
           Gammaproteobacteria|Rep: Aldose 1-epimerase - Vibrio
           parahaemolyticus
          Length = 343

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 467 KVTHPLRNENQMSHIPDAGGSKTSPVSLVN 378
           KVT+ L +EN+++   DA   KTSPV+L N
Sbjct: 141 KVTYTLTDENELAIAYDAKTDKTSPVNLTN 170


>UniRef50_A6BZ31 Cluster: Probable NADH-dependent dehydrogenase;
           n=1; Planctomyces maris DSM 8797|Rep: Probable
           NADH-dependent dehydrogenase - Planctomyces maris DSM
           8797
          Length = 515

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 470 QKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNESGLDSLI--YPLSK 309
           +K  H   NE+++  I   G  K S +   +D+  +I   NE GL++++   PLS+
Sbjct: 89  KKAFHGHGNEHRVGLINKLGAEKASKIKQYDDHNKLIAAKNELGLEAVVIAVPLSQ 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,821,658
Number of Sequences: 1657284
Number of extensions: 11546723
Number of successful extensions: 25276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25271
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)