Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0350
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    28   1.3  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.9  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.7  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   6.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   8.8  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   8.8  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 438 IFIA*WMGYFL--SSIFST--VSRWSLCSPARLSAPTRASVELS 557
           I ++ WMGYFL   S+  T  V+R    +P  L  P RA ++L+
Sbjct: 124 IIVSEWMGYFLLYESMLDTVLVARDRYLAPDGLLFPDRAQIQLA 167


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 213 PYYMDFLFVDRYNHYPS 263
           P Y DF+ VD   HYPS
Sbjct: 765 PIYFDFVGVDGVGHYPS 781


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 514 GLHKDHLDTVLKILDRK*PIHYAMKIKCLISPTQVALKRHRYHLSMITS 368
           G ++D+LD+  K+L     +HYA   + L+SP  +A +    H ++  S
Sbjct: 80  GSNRDYLDSCRKVLAGMFLVHYAN--RALVSPLLMAPQVSPMHWTVFVS 126


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 468 LSSIFSTVSRWSLCSPA 518
           L  +FS V+RWSL +PA
Sbjct: 619 LDLVFSNVARWSLNNPA 635


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 457 WVTFCPVSLARCRGGP 504
           WV  C   L +CRGGP
Sbjct: 143 WVEKCSQLLEKCRGGP 158


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 468 LSSIFSTVSRWSLC 509
           LS+++S +SRW+LC
Sbjct: 358 LSNLWSEISRWALC 371


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 458 HPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNES 342
           HP   + Q+ H P+   S+ SP++ V  Y+  + L +E+
Sbjct: 79  HPESKQRQLPHSPEHERSR-SPIASVVSYRSHMTLEDEN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,172
Number of Sequences: 5004
Number of extensions: 51110
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)