Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0350
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    28   5.2  
12_01_0592 + 4848467-4849164,4849413-4849491                           27   9.1  
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383...    27   9.1  

>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 518 SWTAQGPPRHRAKDTGQKVTHPLRNENQMSHIPDA 414
           SW   G    +A D  +K++H LR+ N  + +PDA
Sbjct: 530 SWAESG--FIKAYDRAEKISHRLRDNNDNTEMPDA 562


>12_01_0592 + 4848467-4849164,4849413-4849491
          Length = 258

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 559 GDNSTDARVGADRRAGLHKDH 497
           GD++ D R+GA+R+ G H  H
Sbjct: 201 GDSAHDQRMGAERKEGAHLRH 221


>06_03_1183 +
           28237467-28237612,28238035-28238089,28238216-28238354,
           28238433-28238487,28238578-28238646,28239338-28239560,
           28239645-28239740,28240708-28240827,28240937-28241062,
           28241369-28241524,28242706-28242828,28242913-28242980,
           28243119-28243254,28243365-28243530,28243615-28243853
          Length = 638

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 621 RVLRHGGAVPPQVLLKDYL 565
           + L+HGGA  P  LLKD++
Sbjct: 595 KFLKHGGAKDPSALLKDFV 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,701,911
Number of Sequences: 37544
Number of extensions: 303459
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)