Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0350
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 158 FTEISKGFWKESSLFYLKKIQKLIMVLMVITI*HSISINK 39
           F   S   W+E S+  +K IQ LIM +M+ +  + + I+K
Sbjct: 418 FQRSSIQLWRERSVLLVKLIQTLIMSIMIGSTYYGLEIDK 457


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 491 HRAKDTGQKVTHPLRNENQMSHIPDAGGSKTSPV 390
           H    T QK+T+P+++E + S+  D  G +T P+
Sbjct: 758 HYGAPTSQKITNPMKDEKRKSN--DLRGPRTGPM 789


>Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical
           protein F58E10.5 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 461 THPLRNENQMSHIPDAGGSKTSPVSLVNDYK 369
           T+P  NEN M  IP  GG    P   V ++K
Sbjct: 127 TNPDNNENSMPEIPIDGGFNFFPAQEVQEWK 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,885
Number of Sequences: 27780
Number of extensions: 282588
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)