Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0350
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44030.1 68414.m05079 DC1 domain-containing protein contains ...    28   4.3  
At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2) ide...    28   5.7  
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai...    28   5.7  
At5g64813.1 68418.m08152 GTP-binding protein-related contains we...    27   7.6  
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    27   7.6  

>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 597

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 460 PIHYAMKIKCLISPTQVALKRHRYHLSMITS 368
           P  + + +KC+  P  + + RH++ +S  TS
Sbjct: 446 PCDFVVHLKCISLPRVIRISRHQHRISFTTS 476


>At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2)
           identical to SP|O82122 Vegetative storage protein 2
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF03767: HAD superfamily (subfamily IIIB) phosphatase
          Length = 265

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 207 CNPYYMDFLFVDRYNHYPSLVICIRLFVYKKRIAFR 314
           C  Y  D+L   +   Y S  +C   + Y K +A +
Sbjct: 74  CKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALK 109


>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
           weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
           6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
           (Double minute 2 protein) (Swiss-Prot:P23804) [Mus
           musculus]
          Length = 785

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 497 PRHRAKDTGQKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNESGLDSLIY 321
           P H    T Q     LR+   +    D   S    V L N +K   C+ NE+ +++L+Y
Sbjct: 688 PTHNLHSTLQLEMSELRDS--VKTCLDVNASLQKSVHLENPFKRKCCVCNETQVETLLY 744


>At5g64813.1 68418.m08152 GTP-binding protein-related contains weak
           similarity to Ras-related protein Rab-27A (Rab-27)
           (GTP-binding protein Ram) (Swiss-Prot:P51159) [Homo
           sapiens]
          Length = 342

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 494 RHRAKDTGQKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHII 360
           R R ++  +++  PL  + ++  + D+G  KTS V L+N    I+
Sbjct: 5   RERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIV 49


>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 485 AKDTGQKVTHPLRNENQMSHIPDAGGSKTSPVSLVNDYKHIICLTNE-SGLDSL 327
           AK   Q++    +   Q+  +PD+ G  +S  SL     HI+ L N   GL SL
Sbjct: 218 AKKATQEINLQNKLTEQLEWLPDSLGKLSSLTSLDLSENHIVVLPNTIGGLSSL 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,448
Number of Sequences: 28952
Number of extensions: 252690
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)