Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0348
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   3.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 487 PEMVSPTPYPSTKVTLCPTPSSVWT 413
           P  +SP  +P+T   +   P+SV T
Sbjct: 447 PNYISPEVFPNTNNAIMTPPASVQT 471


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 487 PEMVSPTPYPSTKVTLCPTPSSVWT 413
           P  +SP  +P+T   +   P+SV T
Sbjct: 395 PNYISPEVFPNTNNAIMTPPASVQT 419


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 273 LLLEVEGDIAELLLDVTNDFP 335
           L+ + E +  ++LLDV N FP
Sbjct: 465 LVYQNEAEEVKILLDVINHFP 485


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 498 RARLRRWCLPHRTHLRRLRSAPRHPPSGLG 409
           RARLR+      T L R  +  R+PP   G
Sbjct: 272 RARLRKQITSAATPLVRSYAPERYPPLAQG 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,819
Number of Sequences: 336
Number of extensions: 2678
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)