Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0348
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 159 4e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 6e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 1e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 70 3e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 2e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 2e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.003
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 33 0.025
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.41
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 28 0.95
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 1.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.2
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.9
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 5.1
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 6.7
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 6.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.9
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 8.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 159 bits (385), Expect = 4e-40
Identities = 73/80 (91%), Positives = 79/80 (98%)
Frame = -2
Query: 509 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 330
+TGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAERE
Sbjct: 148 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAERE 207
Query: 329 IVRDIKEKLCYVALDFEQEM 270
IVRDIKEKLCYVALDFEQE+
Sbjct: 208 IVRDIKEKLCYVALDFEQEL 227
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -1
Query: 252 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 151
+SLEKSYELPDGQVITIGNERFR PEALFQPS L
Sbjct: 234 SSLEKSYELPDGQVITIGNERFRAPEALFQPSAL 267
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = -3
Query: 616 PRGDREKMTQIMFETFNSPAMYVAIQAVLSLYASGR 509
P+ +REKMTQI+FETFN+PA YVAIQAVLSLYASGR
Sbjct: 112 PKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGR 147
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 6e-23
Identities = 44/77 (57%), Positives = 59/77 (76%)
Frame = -2
Query: 509 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 330
S+G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFE 207
Query: 329 IVRDIKEKLCYVALDFE 279
VR++KEKLCYV+ D E
Sbjct: 208 TVREMKEKLCYVSYDLE 224
Score = 48.8 bits (111), Expect = 6e-07
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -1
Query: 252 TSLEKSYELPDGQVITIGNERFRCPEALFQP 160
T L ++Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 234 TVLMRNYTLPDGRVIKVGSERYECPECLFQP 264
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -3
Query: 616 PRGDREKMTQIMFETFNSPAMYVAIQAVLSLYASG 512
P +REKM + MFE + +YVAIQAVLSLYA G
Sbjct: 112 PVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 63/80 (78%)
Frame = -2
Query: 509 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 330
+TGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+E
Sbjct: 153 TTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKE 212
Query: 329 IVRDIKEKLCYVALDFEQEM 270
IVR+IKEK CYVA DF E+
Sbjct: 213 IVREIKEKCCYVASDFRSEI 232
Score = 39.1 bits (87), Expect = 5e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 237 SYELPDGQVITIGNERFRCPEALFQPSFL 151
+Y+LPD Q IT+G E F PE LF P +
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMM 272
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -3
Query: 607 DREKMTQIMFETFNSPAMYVAIQAVLSLYASGR 509
++EK+ + +ET N PA+ ++Q VL+LYAS R
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASAR 152
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 69.7 bits (163), Expect = 3e-13
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = -2
Query: 515 RSSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTT 342
RS TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKT 236
Query: 341 AEREIVRDIKEKLCYVALDFEQE 273
AER IKE+ CYV D +E
Sbjct: 237 AER-----IKEECCYVCPDIVKE 254
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 616 PRGDREKMTQIMFETFNSPAMYVAIQAVLSLYAS 515
P +RE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = -2
Query: 500 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 321
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 320 DIKEKLCYVALDFEQEM 270
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 216 QVITIGNERFRCPEALFQPS 157
QV+ + NERF PE LF PS
Sbjct: 272 QVLNLSNERFMIPELLFSPS 291
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = -2
Query: 512 SSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 333
SS+GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLP 223
Query: 332 EIVRDIKEKLCYVALDFEQEM 270
+ C+V+ D+ ++
Sbjct: 224 SQAELLMHDHCHVSSDYTHDI 244
Score = 31.9 bits (69), Expect = 0.077
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 604 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRPPVS 497
R MT+++FE +N+P++ I + S Y + +P S
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSS 166
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -1
Query: 240 KSYELPDGQVITIGNERFRCPEALFQPSF 154
K +E PDG G ERFR E LF PSF
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSF 307
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 252 TSLEKSYELPDGQVITIGNERFRCPEALFQP 160
T E +E PDG + G ER++ PE LF P
Sbjct: 258 TIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 616 PRGDREKMTQIMFETFNSPAMYVAIQAVLSLYASGR 509
P +R K + MFE+ PA Y+A Q + +ASG+
Sbjct: 110 PPENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 607 DREKMTQIMFETFNSPAMYVAIQAVLSLYASG 512
DRE TQ FE P +A + ++ LYA G
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIG 192
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -2
Query: 509 STGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 351
S V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 291 SAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 510 VHRYRARLRRWCLPHRTHLRRLRSAPRHPPSGLGWSRLDRLPHEDPH 370
V Y +++ +C P +RS P PP+ R PH PH
Sbjct: 136 VQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPH-TRPPHHPPH 181
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -3
Query: 601 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRPPVSCSTPEMVSPTPYPSTKVTLCPTPSS 422
E +T + + S ++ S AS PVS S + T P+T TL SS
Sbjct: 215 ETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASS 274
Query: 421 VWTWLV 404
++LV
Sbjct: 275 SSSYLV 280
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 457 STKVTLCPTPSSVWTW 410
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 502 VSCSTPEMVSPTPYPS 455
+SCS+PEMV+ T PS
Sbjct: 222 LSCSSPEMVATTQLPS 237
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 493 STPEMVSPTPYPSTKVTLCPTPSS 422
+ P+ V+ P+P T TL TPS+
Sbjct: 241 TAPDQVALPPFPDTNSTLTYTPSN 264
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 616 PRGDREKMTQIMFETFNSPAMYVAIQAVLSLYASGRPPV 500
PR E ++I F + Y+AI A+L +YA R P+
Sbjct: 44 PRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPL 82
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 6.7
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = -2
Query: 575 DLQLPRHVRRHPGRALAVRLRSSTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 396
DLQ+ + P L V+L ++ + +D+G+ S T+ G+ L L ++ + L
Sbjct: 955 DLQILVDIMLRPYNGLEVKLNANNNLEIDTGNIPSLTLRRQIGFLTMTEELLLQISSK-L 1013
Query: 395 TDYLMKILTERGYSFTTT----AEREIVRDIKEKLCY 297
+ KIL Y+ + + +E + + K+ Y
Sbjct: 1014 SSVAPKILNAVLYNLVVSDDQISSQEAFENFEVKMAY 1050
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 133 TKLDHLEEGRLEESLGTTEPLVTDGDHL 216
T+L ++E + E S+ T E L+T +HL
Sbjct: 1244 TELQFVQETKEEVSISTIESLITINNHL 1271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 520 ASGRPPVSCSTPEMVSPTPYPSTKVTLCPTPSS 422
A+G PPV P P P PS V P PS+
Sbjct: 1185 AAGVPPVP--PPSEAPPVPKPSVGVPPVPPPST 1215
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 508 PPVSCSTPEMVSPTPYPSTKVTLCPTPS 425
P S P P P PS+++ P PS
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 505 PVSCSTPEMVSPTPYPSTKVTLCPTPSS 422
P S + P+M +PTP P +++ P PS+
Sbjct: 1694 PQSAAPPQMSAPTP-PPPPMSVPPPPSA 1720
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 456 LRRLRSAPRHPPSGLGWSRLDRLPHED 376
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 508 PPVSCSTPEMVSPTPYPSTKVTLCPTPSSVWTWLVA 401
P S ST ++PTP +T ++ PTP++ T A
Sbjct: 840 PVQSSSTTSSITPTP--TTTSSITPTPTTTSTTTTA 873
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 538 AVLSLYASGRPPVSCST 488
++LSLYAS RP VS S+
Sbjct: 218 SILSLYASPRPQVSSSS 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,983
Number of Sequences: 5004
Number of extensions: 45650
Number of successful extensions: 174
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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