Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0348
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              75   7e-16
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 74.5 bits (175), Expect = 7e-16
 Identities = 34/36 (94%), Positives = 35/36 (97%)
 Frame = -1

Query: 252 TSLEKSYELPDGQVITIGNERFRCPEALFQPSFL*M 145
           +SLEKSYELPDGQVITIGNERFRCPEALFQPSFL M
Sbjct: 9   SSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 44


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 309 LLDVTNDFPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 479
           ++D+T     S  G+ V     +L+ +VG  A   +  E+G G + VT  + +   DT
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 507 HRYRARLRRWCLPHRTHLRRLRSAPRHPPS 418
           HR        C P   +L ++ S P HPP+
Sbjct: 69  HRLYPAFSSSCDPVPGNLEQIGSRPLHPPA 98


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 473 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 375
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 572 LQLPRHVRRHPGRALAVRLRSSTGIVL 492
           +Q   H   H G+ + +R+   TG+VL
Sbjct: 567 IQACSHHLTHKGKPIRMRIGIHTGMVL 593


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,167
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)