Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0344
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 33 0.029
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 1.9
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 27 2.5
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 26 4.3
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 5.7
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 7.6
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 10.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 10.0
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 10.0
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 33.5 bits (73), Expect = 0.029
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 205 ASEVVNFDESG*LLQIAGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 375
+ E+++F E L G + L C+IN W LRL +L + NQ S E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302
Query: 376 PEKRLP 393
EKR+P
Sbjct: 303 QEKRVP 308
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 414 RANYPLPAREVVTKNNDT 467
+AN P+P EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 588 FSIRYWSWNYRGCWHQTCPPIVPR*NIKVYSFRLR 484
F Y WNY G +Q P +P KV+ LR
Sbjct: 96 FKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLR 130
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 265 VLDQRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIP 158
++DQ K IH + L + PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 402 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 304
P MW P N+ + YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 400 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 299
L ++ S+ P + PD P T+ V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.6
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -1
Query: 449 HYLPCREWVICAPA 408
HY+PC+ W++ P+
Sbjct: 455 HYIPCQSWLVWYPS 468
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 630 AAHKCNYELFNRNNFSIRYWSWNYR 556
AA KC +E FSI + S+N++
Sbjct: 73 AASKCEFEKIWSTTFSISFLSFNFK 97
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 501 YSFRLRGLVRVPYRYFSSLPPVPGVGNL 418
YS RLR ++ Y+Y + P PG+ ++
Sbjct: 271 YSHRLRDSLKEVYQYRRIISPPPGLSSM 298
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 54 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 158
N IY+ +F ++S++ + + I L +RT++SD
Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,227
Number of Sequences: 5004
Number of extensions: 52803
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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