Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0344
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 18  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 152
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -2

Query: 259 DQRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 125
           D++      I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 218 DRKEKLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 404  RQQARKLPTPGTGGSDE 454
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 404  RQQARKLPTPGTGGSDE 454
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 SAAHKCNYELFNRNNFSIRYWSWNY 559
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 SAAHKCNYELFNRNNFSIRYWSWNY 559
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 SAAHKCNYELFNRNNFSIRYWSWNY 559
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 SAAHKCNYELFNRNNFSIRYWSWNY 559
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 SAAHKCNYELFNRNNFSIRYWSWNY 559
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,943
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)