Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0343
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    27   0.20 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.47 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1

Query: 226 WINEIPTVPITI 261
           W+NEIPT+P++I
Sbjct: 321 WLNEIPTMPVSI 332


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 566 PRTGSRGSFKRRRAFPPRHPLHAWNETPCARRYYRPRTASAQPSK 432
           PR  S+   +  ++   R P     +      YYRPRT+  +P +
Sbjct: 200 PRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPPR 244


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 395 SSLKNHYFHCFITYSVGRK 451
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 586 NSPPGSVLEPDHAGVLNGDERFRHVTLCTLG 494
           N  PG +  P+H  V       R+ T+ T G
Sbjct: 310 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 340


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 620 ALFFDRCTAPVKLPAWQC 567
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 620 ALFFDRCTAPVKLPAWQC 567
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 586 NSPPGSVLEPDHAGVLNGDERFRHVTLCTLG 494
           N  PG +  P+H  V       R+ T+ T G
Sbjct: 258 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 288


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 586 NSPPGSVLEPDHAGVLNGDERFRHVTLCTLG 494
           N  PG +  P+H  V       R+ T+ T G
Sbjct: 441 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 471


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 557 GSRGSFKRRRAFPPRHPLHAWNETPCARRYYRP 459
           G+ G  +RR     R  L A+  T     +Y+P
Sbjct: 170 GTTGKLRRRSTAASRSRLAAFKRTIALGAFYQP 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,018
Number of Sequences: 336
Number of extensions: 3674
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)