Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0343
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.7  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.2  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   8.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 599 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 700
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 390 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSNRDSGNL 235
           +K+ PT      S  + R  +  +  S PA+S  P+P     L SN  S NL
Sbjct: 177 SKQLPTLPLQKSSKLSNRRPALHSFHSAPANSLYPLPTPTSQLPSNLSSNNL 228


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 315 SSFPADSPKPVPLAVVSLDSNRDSGNLVNPF 223
           S  P  +P+PVP   V++D   D    + PF
Sbjct: 547 SYIPEPNPQPVPETEVTIDPKSDRLEALEPF 577


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 716  SPYAY*TSGSSQLLPFCSTRGF 651
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 369 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSNRDS 244
           +T    PY A  + ++TGSSF AD  K +P+   ++ S + S
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK-MPMFTSNVTSAQPS 291


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 190 GYLKRVIVTPAVYPRLLEFLHVDIQST 110
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,954
Number of Sequences: 5004
Number of extensions: 60909
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)