Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0343
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.1  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   3.7  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   4.9  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   6.5  
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    28   6.5  
11_06_0132 - 20431122-20431477,20431739-20433758                       28   8.6  
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550...    28   8.6  
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543...    28   8.6  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 208 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 107
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 390 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 265
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 519 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 608
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 598 PPQSNSPPGSVLEPDHAGVLNGDE 527
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 598 PPQSNS---PPGSVLEPDHAGVLNGDERFRHVTLCTLGTKHRA 479
           PP + S   PP +VL   H  V+ GDE  +   +  LG   RA
Sbjct: 6   PPHAGSGGPPPPAVLALPHGMVVVGDEAVQRAVVLRLGVNFRA 48


>11_06_0132 - 20431122-20431477,20431739-20433758
          Length = 791

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 378 PTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSNRDSGNLVNPFMRVTN 208
           P   + L S  N  L+++    S P D    + L   +LD+N  +G+L +   R+ N
Sbjct: 147 PDSLSNLSSLTNLFLDTNKISGSIPEDIDNLINLQAFNLDNNNFTGHLPSSIGRLQN 203


>04_01_0416 -
           5504415-5504590,5509032-5509116,5509190-5509322,
           5509426-5510312
          Length = 426

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 363 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 256
           PL+ P  AR   SSTGSSFP  S  P    ++ L S
Sbjct: 47  PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81


>02_05_0726 -
           31252210-31253166,31253667-31253840,31254320-31254364,
           31254463-31254573,31254669-31254746,31255170-31255234,
           31255358-31255733,31256891-31257035,31257308-31257462,
           31259036-31259182
          Length = 750

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -2

Query: 381 SPTYATPLMSPYNARLESSSTGSSFPADSPK---PVPLAVVSLDSN 253
           SP Y  P ++  N  + S +T S  P   PK    VP +    D N
Sbjct: 159 SPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDPSVPASKAEADGN 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,025,821
Number of Sequences: 37544
Number of extensions: 468132
Number of successful extensions: 1550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)