Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0343
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.5
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.3
U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical p... 29 3.3
U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical p... 29 3.3
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical ... 28 5.8
Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 22 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 153
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 22 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 153
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 405 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 286
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 405 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 286
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical
protein C17G10.6b protein.
Length = 487
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 547 GVLNGDERFRHVTLCTLGTKHRAPADIIDR--APLPPNRVSNETMKVVVFQRRSRE 386
G + GDE RH + + GTKH AP R AP ++E +KV R R+
Sbjct: 141 GFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDLEGTENSEGVKVTTKTRSGRD 196
>U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical
protein C17G10.6a protein.
Length = 683
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 547 GVLNGDERFRHVTLCTLGTKHRAPADIIDR--APLPPNRVSNETMKVVVFQRRSRE 386
G + GDE RH + + GTKH AP R AP ++E +KV R R+
Sbjct: 192 GFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDLEGTENSEGVKVTTKTRSGRD 247
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +2
Query: 254 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 433
+ S TT+ + +S+ ++ LD AL G +R VA + DR R SLKN F+T
Sbjct: 32 IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87
Query: 434 YSVGRKRCAVDNIGGRTVF 490
Y+ + NI R+ F
Sbjct: 88 YTPVILNASTTNIVTRSKF 106
>AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical
protein ZC190.4 protein.
Length = 629
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -1
Query: 499 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 365
+GT+ + DIID +P N +S++ + +++ R ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328
>Z32679-2|CAA83592.1| 385|Caenorhabditis elegans Hypothetical
protein C05B5.2 protein.
Length = 385
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 408 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSNR 250
F+S+ A RS + P+MS + +++T + PA S K + D+ R
Sbjct: 46 FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIKVADILEEDADAIR 98
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 402 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 286
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,481
Number of Sequences: 27780
Number of extensions: 358524
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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