Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0343
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 33 0.14
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.77
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.3
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 30 1.8
At1g78240.1 68414.m09118 dehydration-responsive protein-related ... 29 2.3
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 4.1
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 4.1
At2g26380.1 68415.m03166 disease resistance protein-related / LR... 29 4.1
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 29 4.1
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 28 5.4
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 7.2
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 9.5
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 9.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.5
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.5
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote... 27 9.5
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 9.5
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = -2
Query: 336 LESSSTGSSFPADSPKPVPLAVVSLDSNRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 157
L ++ FP L V L NR SG + + +R++ T ++ S +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175
Query: 156 FTRACLNFFTLTFRALGRNHIASTPA 79
+A L FF ++ L HI T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 499 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 353
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 184 GSQMPRHLISDAHEWINEIPTVPITI*RNHSQGNGLGRISGER 312
G +P + +SD + INE+ P I + + NGL + G+R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 369 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS----LDSNRDSGNL 235
A+ + SP+N+ L S SS +D P PL +VS L S R+SG +
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSNDIVLSSLRNSGKV 153
>At1g78240.1 68414.m09118 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 684
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 215 TRMNGLT-RFPLSLLLSSETTAKGTGLGESAGKEDP 319
T N LT RFP L S+++++K G GE+ DP
Sbjct: 36 TENNNLTLRFPFGFLFSNQSSSKHGGGGENGFSADP 71
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 172 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 62
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 172 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 62
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At2g26380.1 68415.m03166 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-2A
[Lycopersicon pimpinellifolium] gi|3894389|gb|AAC78594
Length = 480
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -2
Query: 270 VSLDSNRDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNHIA 91
++LD NR SG + + F +TN L+ R S LPP + L F LG+N+++
Sbjct: 205 LNLDGNRLSGTIPDIFKSMTNLRILTLSRNRFSGKLPPSIASLAP--VLAFLELGQNNLS 262
Query: 90 ST 85
+
Sbjct: 263 GS 264
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 333 ESSSTGSSFPADSPKPVPLAVVSLDSNRDSGN 238
+ + G+S PA +P P+PL ++ D + D +
Sbjct: 264 DDKAKGNSVPATAPTPIPLVSINHDDDDDESD 295
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 330 SSSTGSSFPADSPKPVP--LAVVSLDSNRDSG 241
SS+ GS PA S P P L V +L+S RDSG
Sbjct: 765 SSNLGSPSPAASSLPPPSRLHVTTLESPRDSG 796
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 463 DRAPLPPNRVSNETMKVVVFQRRSRET 383
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 454 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 344
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 454 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 344
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 381 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 274
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 502 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 407
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 670
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 378 PTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSNRDSGNLVN 229
PT T L Y L ++ P D L + L+SNR SG + N
Sbjct: 131 PTSITSLTRLYRLDLSFNNFSGQIPPDLTDLTHLLTLRLESNRFSGQIPN 180
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 508 LCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 377
LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 56 LCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,181,141
Number of Sequences: 28952
Number of extensions: 342810
Number of successful extensions: 1038
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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