Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0342
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 1.1
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 26 1.8
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 2.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 4.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 24 5.6
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 5.6
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 24 7.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 23 9.8
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 23 9.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 23 9.8
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 266 ASLSRDPPSLRAWHPLRENGP 204
+S+SR+P S RA P R+N P
Sbjct: 165 SSVSRNPASSRAGSPTRDNAP 185
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 273 LRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATR 166
L +VP +RP +A+G P++ P + T G+ A +
Sbjct: 192 LGNVPESRPGLASGHIPTSINIPFTETTAAGITAPK 227
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 2.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 240 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 133
A G+AP T K P R + + LP T V
Sbjct: 40 AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 4.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 288 SSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTS 139
SS P SVP + ++ P+T P + T T +P+++S
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSS 144
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 165 KRNLPNTTSPVID*NNGIQCW 103
+RN P+ +P+ D N Q W
Sbjct: 638 RRNAPDINNPIADFQNSFQNW 658
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 288 SSNPTLRSVPLARPSVATGLAPSTGKRPRSRRT 190
+SN +SVP+ P+V T S+ + R T
Sbjct: 65 TSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 209 GPVQDELGQXXXXXXXXXXXTPHLPLSIKTTGFSAGLYSCSLA 81
G +++ L Q PH+PLS + F+ ++C++A
Sbjct: 2 GELKEILKQRYHELLDWNVKAPHVPLSQRLKHFTWSWFACTMA 44
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 23.4 bits (48), Expect = 9.8
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Frame = -2
Query: 312 YHPLRAALSSNPTLRSVPLARPSVATGLAP-------STGKRPRSRRTWTGVVATRKRNL 154
Y+P RA L P+ PL+ T L P S+ P +R + + L
Sbjct: 346 YNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNIL 405
Query: 153 PNTTSPVID*NNGI 112
N SP+ NN +
Sbjct: 406 SNQLSPISSANNDV 419
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 109 VLGYIPVRSPLLRKSWLVSFPPLTNMLKFG 20
+LGY P ++P R+ ++ + N + FG
Sbjct: 218 LLGYFPKKTPSYREITTPAYSKIDNYIWFG 247
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 297 AALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL 154
A ++ LRS+ +A ++ + PS KRP + + + +A + +L
Sbjct: 156 ALRTTEDRLRSMEMAYAQLSAKVIPSPSKRPANYKFYEQRIAMLEESL 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,694
Number of Sequences: 5004
Number of extensions: 25167
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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