Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0342
(343 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 42 2e-04
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 40 5e-04
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 36 0.007
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 36 0.007
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 36 0.007
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 36 0.007
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.026
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 33 0.046
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.061
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 33 0.061
SB_45983| Best HMM Match : HLH (HMM E-Value=1.3) 31 0.18
SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.24
SB_7131| Best HMM Match : Tetraspannin (HMM E-Value=0.17) 29 0.75
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 24 1.6
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 27 3.0
SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 27 4.0
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 27 5.3
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 26 7.0
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 26 7.0
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 26 7.0
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8) 26 9.2
SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038) 26 9.2
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2) 26 9.2
SB_27738| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1
Query: 343 LAVIFSLRWSLPPA*GCTLKQPDS----KERPSRATLRRYGPGT 224
L IFS RWSLPP GC KQPDS +ERP R+ + P T
Sbjct: 103 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP-RSPQTGFSPST 145
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = -1
Query: 343 LAVIFSLRWSLPPA*GCTLKQPDS----KERP 260
L IFS RWSLPP GC KQPDS +ERP
Sbjct: 72 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP 103
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 59 ESGCLGMQPKMGGKLHLKLNI 79
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 5 ESGCLGMQPKMGGKLHLKLNI 25
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 59 ESGCLGMQPKMGGKLHLKLNI 79
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 33 ESGCLGMQPKMGGKLHLKLNI 53
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 58 ESGCLGMQPKMGGKLHLKLNI 78
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 117 ESGCLGMQPKMGGKLHLKLNI 137
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 16 ESGCLGMQPKMGGKLHLKLNI 36
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 273 ESGCLRVQP*AGGKLHLRLNM 335
ESGCL +QP GGKLHL+LN+
Sbjct: 722 ESGCLGMQPKMGGKLHLKLNI 742
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 34.3 bits (75), Expect = 0.026
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -1
Query: 343 LAVIFSLRWSLPPA*GCTLKQPDS----KERPSRATLRRYGPGT 224
+ ++ + RWSLPP GC KQPDS ++RP R+ + P T
Sbjct: 28 IILLHTRRWSLPPILGCIPKQPDSSKAHRKRP-RSPQTGFSPST 70
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 33.5 bits (73), Expect = 0.046
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = -1
Query: 322 RWSLPPA*GCTLKQPDS----KERP 260
RWSLPP GC KQPDS +ERP
Sbjct: 62 RWSLPPILGCIPKQPDSSKAHRERP 86
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.1 bits (72), Expect = 0.061
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2
Query: 327 ALDGVYHPLRAALSSNPTLR 268
ALDGVYHP AA +NPT R
Sbjct: 58 ALDGVYHPFWAAFPNNPTRR 77
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 33.1 bits (72), Expect = 0.061
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2
Query: 327 ALDGVYHPLRAALSSNPTLR 268
ALDGVYHP AA +NPT R
Sbjct: 344 ALDGVYHPFWAAFPNNPTRR 363
>SB_45983| Best HMM Match : HLH (HMM E-Value=1.3)
Length = 68
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2
Query: 324 LDGVYHPLRAALSSNPTLR 268
LDGVYHP AA +NPT R
Sbjct: 2 LDGVYHPFWAAFPNNPTRR 20
>SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 327 ALDGVYHPLRAALSSNPTLR 268
ALDG YHP AA +NPT R
Sbjct: 58 ALDGFYHPFWAAFPNNPTRR 77
>SB_7131| Best HMM Match : Tetraspannin (HMM E-Value=0.17)
Length = 173
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 264 VPLARPSVATGLAPSTGKRPRSRRTWTGVV 175
+PL RP +A GL S G+ R+R+T T V
Sbjct: 144 LPLYRPGLADGLDDSDGEEDRTRKTRTVAV 173
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 193 NLDRSRRDEKAEPPEHHISRYR 128
++D++ R A PP HH ++R
Sbjct: 731 HVDQAERPRVATPPTHHKDQHR 752
Score = 23.0 bits (47), Expect(2) = 1.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -1
Query: 277 DSKERPSRATLRRYGPGTLYGKTAPFKTNLDRSRR 173
+ +R S++ + + PG+++GK KT+ D ++
Sbjct: 683 EGNKRQSKSIISKLRPGSIHGKEKK-KTDTDSDKK 716
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 199 KTNLDRSRRDEKAEPPEHHISRYRLKQRDSV-LGYIPVRSPLLRKSWLVSFPP 44
KT S + P +RYR++ RDSV ++ R+P S L++F P
Sbjct: 364 KTANATSSATNTTDLPRRRGTRYRIRARDSVDKSFVKFRNPNPSFSGLLTFEP 416
>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 273 LRSVPLARPSVATGLA-PSTGKRPRSRRTWTG 181
L S+ LARP TGL ST + P SR T G
Sbjct: 30 LDSIRLARPCTVTGLKHESTPENPDSRSTGAG 61
>SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 280 PDSKERPSRATLRR-YGPGTLYGKTAPFKTNLDRSRRDE-KAEPPEHHISRYRLKQRDSV 107
PDS+ PS R + G +A + + + ++PP+H S RD+
Sbjct: 100 PDSRPPPSEGAKRHEFATWHARGCSADLEKGVKSNEEGRASSQPPQHSFSDLSQSHRDTN 159
Query: 106 LGYIP 92
+ Y+P
Sbjct: 160 IPYLP 164
>SB_5107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 320 MEFTTRLGLHSQAT 279
MEFTT GLHSQ T
Sbjct: 1 MEFTTHFGLHSQTT 14
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 279 PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTT 142
P SVP + AT LAP T P++ VA + P TT
Sbjct: 3030 PETTSVPATTDAPATTLAPETTAAPKTTVAPETTVAPETTDAPATT 3075
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -2
Query: 294 ALSSNPTLRS---VPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTS 139
+L S P+L + P A + + PST S T T + AT +LP+T+S
Sbjct: 171 SLPSTPSLEASSNTPTALSATSLMSLPSTSSLEASSNTPTALSATSLMSLPSTSS 225
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 271 KERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 152
K +P+R +R G G + KTN ++ R+ + PP
Sbjct: 188 KRQPNRKNNQRKGRGNIGNNGGQQKTNGNKRRQTQDPRPP 227
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 271 KERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 152
K +P+R +R G G + KTN ++ R+ + PP
Sbjct: 44 KRQPNRRNNQRKGRGNIGNNGGQQKTNGNKRRQTQDPRPP 83
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 291 LSSNPTLRSVPLARPSVATG--LAPSTGKRPRSRRTWTGVVATRKRNL 154
++SN +LRS PLA S+ T L ++G + + R + VVA R L
Sbjct: 1 MASNTSLRSNPLASSSIITKPLLERTSGLKKYAVRLYETVVALTFRGL 48
>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 324 LDGVYHPLRAALSSNPTLRSVPLARP 247
LD Y ALS+NP LR PLA+P
Sbjct: 454 LDQRYQQTSKALSTNPDLRQ-PLAKP 478
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 333 YLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRR 193
Y A G HP + PT R+ P + P+ T P G S+R
Sbjct: 43 YEAKRGCQHPREHISDTEPTHRAHPQSPPTEPTQRLPRDGHPAPSKR 89
>SB_34685| Best HMM Match : RNA_pol_A_bac (HMM E-Value=1.8)
Length = 143
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 283 QPDSKERPSRATLRRYGPGTL 221
Q DS+ P R TLR GPG +
Sbjct: 77 QVDSRGSPKRMTLRATGPGAV 97
>SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)
Length = 1172
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = -1
Query: 166 KAEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNMLK 26
K P +H+++ + +++L Y R + + W++ L N+ K
Sbjct: 1002 KTPQPPYHVTKEQQDFENALLQYTRERGLVAHQPWIIKINQLRNLSK 1048
>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
Length = 372
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 183 GVVATRKRNLPNTTSPVID*NNGIQCWAIFLFARRY*GNPG 61
G + K NLP+T VI + GI W++ RR N G
Sbjct: 98 GDIIIDKHNLPDTGENVIARHWGIDQWSMGYLCRRGQSNGG 138
>SB_27738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 306 PLRAALSSNPTLRSVPLARPSVATGLAP 223
P R ALS N L S P+ +ATG +P
Sbjct: 16 PDRCALSGNYRLESNPVRHRLIATGSSP 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,321
Number of Sequences: 59808
Number of extensions: 212139
Number of successful extensions: 707
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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