Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0342
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 30 0.50
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 30 0.50
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 30 0.50
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 29 0.87
Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical pr... 28 1.5
D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein. 28 1.5
AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride ... 28 1.5
Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical pr... 27 2.7
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 2.7
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 27 4.7
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 27 4.7
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 27 4.7
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 26 6.1
U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of c... 26 8.1
AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding p... 26 8.1
AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich ... 26 8.1
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 26 8.1
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 29.9 bits (64), Expect = 0.50
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 TEGRARGTLLRVGLLESAALSGW*TPSKAKYDR 340
T+G ARGTL+RV L A SG SKA Y +
Sbjct: 424 TKGGARGTLIRVPLKPHEACSGRDALSKAIYSK 456
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 29.9 bits (64), Expect = 0.50
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 TEGRARGTLLRVGLLESAALSGW*TPSKAKYDR 340
T+G ARGTL+RV L A SG SKA Y +
Sbjct: 424 TKGGARGTLIRVPLKPHEACSGRDALSKAIYSK 456
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 279 PTLRSVPLARPSVATGLAPSTGKRPRSRRT---WTGVVATRKRNLPNTTSPVI 130
PT+++ P + T ST + PR+++T WT T ++ P T +P I
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPPI 421
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/62 (25%), Positives = 22/62 (35%)
Frame = -1
Query: 298 GCTLKQPDSKERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQ 119
G ++P R ++ Y P LY +T RRD E RYR +
Sbjct: 186 GAIARRPQGSRRQRNDSINSYNPRVLYQRTRGANDENHPKRRDAAVEKKPKEPRRYRGEH 245
Query: 118 RD 113
D
Sbjct: 246 DD 247
>Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical
protein T27D12.2b protein.
Length = 902
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 333 YLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKR 208
Y+ + Y LR L +PTLRS P S + L S ++
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSMTLLGSVARK 671
>Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical
protein T27D12.2a protein.
Length = 906
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 333 YLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKR 208
Y+ + Y LR L +PTLRS P S + L S ++
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSMTLLGSVARK 671
>D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein.
Length = 902
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 333 YLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKR 208
Y+ + Y LR L +PTLRS P S + L S ++
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSMTLLGSVARK 671
>AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 868
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 333 YLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKR 208
Y+ + Y LR L +PTLRS P S + L S ++
Sbjct: 592 YITRETTYRELREMLLESPTLRSYPFVTDSRSMTLLGSVARK 633
>Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical
protein T02B5.3 protein.
Length = 656
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 258 LARPSVATGLAPSTGKRPRSRRTWTGVVATRK 163
L P V + ++PR ++TW+GV+ T+K
Sbjct: 49 LGIPYVEPPIGDLRFRKPRPQKTWSGVLETKK 80
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -2
Query: 342 SRSYLALDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRK 163
+R Y+A + PT R R + T AP+T + +R T T + T +
Sbjct: 249 TRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRLTTARAT-TPLATTSR 307
Query: 162 RNLPNTTSP 136
P+ T+P
Sbjct: 308 PTTPSPTTP 316
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 297 AALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 136
A L S+P SVP +P G GK +R ++G + R P T+P
Sbjct: 911 ATLQSDPGFPSVPYMKPLGGGGGCRGRGK----KRAFSGFSSGRATKKPRATAP 960
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 156 LPNTTSPVID*NNGIQC--WAIFLFARRY*GNPG*FLFLRLLICL 28
+PN +D NN I C ++IF F F+F+ LLI L
Sbjct: 184 VPNDQGSALDANNNINCLPFSIFKFLNSKFNMKTCFIFMLLLIAL 228
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 297 AALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 136
A L S+P SVP +P G GK +R ++G + R P T+P
Sbjct: 911 ATLQSDPGFPSVPYMKPLGGGGGCRGRGK----KRAFSGFSSGRATKKPRATAP 960
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -1
Query: 271 KERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLGY 98
K+ P+R T+ G T+ + + ++ R DE + EH + R R +L Y
Sbjct: 78 KDLPNRPTINITGGPTMPYRYKLHQISVHFGRADEGEKGSEHTVDRVRFPAEIQLLAY 135
>U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of clr
protein 2, isoforma protein.
Length = 559
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 265 RPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 164
RP++ T R PG + G+ + F N R EK
Sbjct: 10 RPAKETSRSKSPGGIVGRLSNFARNKARHSLSEK 43
>AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding
protein SUR-8 protein.
Length = 559
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 265 RPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 164
RP++ T R PG + G+ + F N R EK
Sbjct: 10 RPAKETSRSKSPGGIVGRLSNFARNKARHSLSEK 43
>AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich
repeat protein SOC-2 protein.
Length = 559
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 265 RPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 164
RP++ T R PG + G+ + F N R EK
Sbjct: 10 RPAKETSRSKSPGGIVGRLSNFARNKARHSLSEK 43
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = -1
Query: 274 SKERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAE-----PPEHHISRY 131
S S LRR P + TAP K+ RSR E E PE H SRY
Sbjct: 210 SSSHVSGIPLRRRSPFSSSKSTAPIKSRHYRSRFSESLEDNVFRSPERH-SRY 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,652,506
Number of Sequences: 27780
Number of extensions: 145595
Number of successful extensions: 479
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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