Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0342
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11610.1 68418.m01355 exostosin family protein contains Pfam ... 29 0.81
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 1.1
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ... 28 1.4
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 28 1.4
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 27 2.5
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 27 2.5
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 27 3.3
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 27 3.3
At3g59620.1 68416.m06652 hypothetical protein 27 4.3
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 27 4.3
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 26 5.7
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ... 26 5.7
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ... 26 5.7
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 26 5.7
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 26 5.7
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 26 5.7
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami... 26 5.7
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 26 5.7
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 26 5.7
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 26 5.7
At3g47750.1 68416.m05202 ABC transporter family protein probable... 26 7.6
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 26 7.6
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 26 7.6
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 26 7.6
At1g26330.1 68414.m03211 hypothetical protein 26 7.6
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 26 7.6
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c... 25 10.0
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c... 25 10.0
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 25 10.0
At1g67250.1 68414.m07654 proteasome maturation factor UMP1 famil... 25 10.0
>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 546
Score = 29.1 bits (62), Expect = 0.81
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Frame = -1
Query: 316 SLPPA*GCTLKQPDSK---ERPSRATLRRYGPGTLYGKTAPFKTN--LDRSRRDEKAEPP 152
SLP +L+ P+ K RPS+ T+ + G+L+G P N R +D K
Sbjct: 361 SLPETKVSSLQNPNGKIGGSRPSKRTILAFFAGSLHGYVRPILLNQWSSRPEQDMKIFNR 420
Query: 151 EHHIS--RYRLKQRDSVL--GYIPVRSPLLRKSWLVSFPPL 41
H S RY + R V GY V SP + +S L P+
Sbjct: 421 IDHKSYIRYMKRSRFCVCAKGY-EVNSPRVVESILYGCVPV 460
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 277 DSKERPSRATLRRYGP--GTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRY 131
D KER +R RYG G + G ++ DRSR+ K P HH Y
Sbjct: 276 DRKER-ARGMEDRYGDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSY 325
>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 453
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 316 SLPPA*GCTLKQPDSK---ERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDE 167
SLP +L+ P+ K RPS+ T+ + G+L+G P N SR ++
Sbjct: 361 SLPETKVSSLQNPNGKIGGSRPSKRTILAFFAGSLHGYVRPILLNQWSSRPEQ 413
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 276 TLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 127
T+ S P + AP TGK+P R + G TRK + S +D
Sbjct: 370 TIPSHDSREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 137 PLSIKTTGFSAGLYSCSLAATKEIL 63
P+S+ +GF LYSC T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P ++ AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPISMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 546 RLTRVSHDVD 555
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = -2
Query: 303 LRAALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 127
+R T+ S +P + AP T K+P R + G TRK + S +D
Sbjct: 593 MRLCKRPEQTIPSHDSRKPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 651
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIHSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 546 RLTRVSHDVD 555
>At3g59620.1 68416.m06652 hypothetical protein
Length = 120
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 176 TTPVQVRLERGRFPVEGAR 232
T P Q E GR PVEGAR
Sbjct: 62 TEPFQFDREHGRVPVEGAR 80
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 484 DFVREQIRAALDPKGKRPKQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 543
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 544 RLTRVSHDVD 553
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 546 RLTRVSHDVD 555
>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 405
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 273 LRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPN 148
L++VP ++ + KR + RT GV + RNLPN
Sbjct: 360 LKTVPSKEETLRMKVRKEMSKRGETMRTKIGVKSNVIRNLPN 401
>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 404
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 273 LRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPN 148
L++VP ++ + KR + RT GV + RNLPN
Sbjct: 359 LKTVPSKEETLRMKVRKEMSKRGETMRTKIGVKSNVIRNLPN 400
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 312 YHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKRPRS 199
+HPLR + S P P + LAP K P S
Sbjct: 747 HHPLRQDYLCSELYASTPAPHPQSSVSLAPPPPKPPSS 784
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 546 RLTRVSHDVD 555
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 546 RLTRVSHDVD 555
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 239 LRAWHPLRENGPVQDELGQ 183
L AW P+ GP++DE G+
Sbjct: 285 LDAWAPMGPKGPIRDEAGK 303
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -2
Query: 321 DGVYHPLRAALSSN-----PTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 157
D V +RAAL T+ S P + AP T K+P R + G TRK +
Sbjct: 466 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 525
Query: 156 LPNTTSPVID 127
S +D
Sbjct: 526 RLTRVSHDVD 535
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -1
Query: 325 LRWSLPPA*GCTLKQPDSKERPSRATLRRYGPGTLYGKTAPF---KTNLDRSRRDEKAEP 155
LR SL + GC + +SKE+ A G + G P + ++ R+ +
Sbjct: 141 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLLK 200
Query: 154 PEHHISRYRLKQRDSVLGYIPV 89
+ H+SR Q S+ G +P+
Sbjct: 201 VQSHVSRLD-PQNPSMFGALPM 221
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -1
Query: 325 LRWSLPPA*GCTLKQPDSKERPSRATLRRYGPGTLYGKTAPF---KTNLDRSRRDEKAEP 155
LR SL + GC + +SKE+ A G + G P + ++ R+ +
Sbjct: 132 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLLK 191
Query: 154 PEHHISRYRLKQRDSVLGYIPV 89
+ H+SR Q S+ G +P+
Sbjct: 192 VQSHVSRLD-PQNPSMFGALPM 212
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 258 LARPSVATGLAPSTGKRPRSRRT-WTGVVATRK 163
+ P V PSTG P SRR+ WT + +K
Sbjct: 776 IGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKK 808
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 51 KETNQDFLSSGERTGI*PSTESRCFNR*REMWCSGGSAFSSRRLLSK 191
KE + ++ + GI P E+ +NR +++C GSA SS ++++
Sbjct: 168 KEAKRVYIEMPKMYGIEPDLET--YNRMIKVFCESGSASSSYSIVAE 212
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 285 SNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL 154
S P V +PSV +A S K P R GVVA R+ NL
Sbjct: 136 SEPVRAEVMNLKPSVQ--VATSDRKEPMKRPDRGGVVAVRRVNL 177
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 276 TLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 127
T+ S P + AP T K+P R + G TRK + S +D
Sbjct: 504 TIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 553
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 248 PPSLRAWHPLRENGPVQDEL 189
P SL AWHP+ + ++D +
Sbjct: 1034 PTSLFAWHPVHSHSTIEDNV 1053
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 324 LDGVYHPLRAALSSNPTLRSVPLARPSVATGLAPSTGKRPRSRRTWT--GVV 175
L+ V P+R A S T VP G P+ ++PR R WT GVV
Sbjct: 599 LNSVARPVRNAGQSGNTPPRVP-----AVFGTTPAAPQQPRDRAPWTSQGVV 645
>At4g21850.2 68417.m03160 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 121
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 249 PSVATGLAPSTGKRPRSRRTWTGVVA 172
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g21850.1 68417.m03159 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 249 PSVATGLAPSTGKRPRSRRTWTGVVA 172
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 276 TLRSVPLARPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 127
T+ S P + AP T K+P R + G TRK + S +D
Sbjct: 452 TIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTETRKSSRLTRVSHDVD 501
>At1g67250.1 68414.m07654 proteasome maturation factor UMP1 family
protein contains Pfam profile PF05348: Proteasome
maturation factor UMP1
Length = 141
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 289 LKQPDSKERPSRATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPP 152
L+ E+ S+ L+R YG P K ++DR PP
Sbjct: 36 LESSYESEKKSKEALKRTVIAHAYGTALPLKMDMDRQILSRFQRPP 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,515,007
Number of Sequences: 28952
Number of extensions: 144815
Number of successful extensions: 418
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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