Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0341
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   9e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.9  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   2.5  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   4.4  
SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD RKTN  E+ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 30/42 (71%), Positives = 33/42 (78%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD RKTN  E+  + VFINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD  +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD  +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD  +   ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD RKTN  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +1

Query: 472 VKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           VKFLD RKTN  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +1

Query: 469 EVKFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           E+ ++  R+T  ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 2   EISWIYERRTT-AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 26/38 (68%), Positives = 30/38 (78%)
 Frame = +1

Query: 484 DRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           +RR    ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 25  ERRARTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +1

Query: 484 DRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           +RR T  ++AFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 10  ERRTT--AKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = +1

Query: 475 KFLDRRKTNISEAFAKGVFINQERKLEVRRRLDTALVLTVN 597
           + L  RKTN  E+  +  FINQERKLE RRR DT LVLT+N
Sbjct: 3   EILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 GEILGSSQDEHQRSICQRCFHQSRTKV 551
           GEILG  +  +  SICQ CF     K+
Sbjct: 2   GEILGFRKTNYCESICQECFINQERKL 28


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +1

Query: 505 SEAFAKGVFINQERKLEVRRRLDT 576
           ++AFAK VFINQERKLE RRR DT
Sbjct: 5   AKAFAKNVFINQERKLEDRRRSDT 28


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +2

Query: 5   TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 181
           T  +   R    ++++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +2

Query: 56  RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 181
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +2

Query: 68  RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 181
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 56  RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 181
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 YTKIVAVKKLVVAFVRRAVGAP 181
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 YTKIVAVKKLVVAFVRRAVGAP 181
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 YTKIVAVKKLVVAFVRRAVGAP 181
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 154 CNYELFNRNNFSIRYWSWNYRGCWH 80
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 605 DDIF--TVRTRAVSNRLRTSNFRS*LMKTPLANASLMFVLRRS 483
           +DIF  T+RTR V+NR+RT+   S   K PL  ++ + V  RS
Sbjct: 875 EDIFGVTLRTREVTNRVRTAARNS--PKYPLDRSTTLTVHMRS 915


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 95
           S R+RCT S + KC     + + F    W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,264
Number of Sequences: 59808
Number of extensions: 344721
Number of successful extensions: 1003
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)