Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0341
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate rece...    30   1.2  
U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate rece...    30   1.2  
AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA iono...    30   1.2  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform b protein.
          Length = 977

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 396 YFVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRSICQRCFHQSRTKVRGSKAIRY 575
           Y  GF N++ +     + H    V G+ L  + +EH + I  + F + +   RG K +  
Sbjct: 316 YRGGFSNTDSIPTAAAFAHDAILVAGKALQIAMNEHGKGIFDKSFVRHQLFNRGRKGLYC 375

Query: 576 RPSSNR 593
           RP  ++
Sbjct: 376 RPHEDQ 381


>U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform a protein.
          Length = 908

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 396 YFVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRSICQRCFHQSRTKVRGSKAIRY 575
           Y  GF N++ +     + H    V G+ L  + +EH + I  + F + +   RG K +  
Sbjct: 247 YRGGFSNTDSIPTAAAFAHDAILVAGKALQIAMNEHGKGIFDKSFVRHQLFNRGRKGLYC 306

Query: 576 RPSSNR 593
           RP  ++
Sbjct: 307 RPHEDQ 312


>AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA
           ionotropic glutamate receptorsubunit GLR-2 protein.
          Length = 977

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 396 YFVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRSICQRCFHQSRTKVRGSKAIRY 575
           Y  GF N++ +     + H    V G+ L  + +EH + I  + F + +   RG K +  
Sbjct: 316 YRGGFSNTDSIPTAAAFAHDAILVAGKALQIAMNEHGKGIFDKSFVRHQLFNRGRKGLYC 375

Query: 576 RPSSNR 593
           RP  ++
Sbjct: 376 RPHEDQ 381


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 213 CPQTCQYHRGCGAPTARRTNATTSFL 136
           CP+TC Y  G G  T  RT+ T + L
Sbjct: 133 CPRTCGYCSGSGVVTTTRTSTTCADL 158


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 127 CCG*KARSCICAPRCRC 177
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 251  EPAFFRTPAHRRYVRK 204
            EP+F RTPAH  Y+ K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 220 DDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 110
           +++ +N++V      + SA HK NYEL    +F +RY
Sbjct: 96  EEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,644,274
Number of Sequences: 27780
Number of extensions: 261414
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)