Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0341
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 464 VAIRMPPVIPINH-----YLGVLKTN 402
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 464 VAIRMPPVIPINH-----YLGVLKTN 402
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = -1

Query: 464 VAIRMPPVIPINH-----YLGVLKTN 402
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 95
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 95
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 95
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 95
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 193 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 95
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 223 TDDMSANVSVSPRMRCTDSAAHKCNYELF 137
           T DM+  +S  P+    ++A    N E+F
Sbjct: 465 TKDMNLEISTRPKSNTVENACVLKNTEIF 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,020
Number of Sequences: 438
Number of extensions: 3348
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)