Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0335
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.7  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    26   3.7  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   8.7  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 503 DPSMSALPNHCEAKFAKRWIVHPSKGNVSWV 411
           DP   A  N   AK  K W    S G   WV
Sbjct: 873 DPEARATKNEIRAKLGKTWRALDSLGKQPWV 903


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 416 SSRSLLMGEQSNAWRILLRND*EEPTSKDQKNVAMNAWLPQAS 544
           SS++LL+ ++    +  L+N  EEP ++++   A+N   P+ S
Sbjct: 67  SSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQS 109


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 509 NVAMNAWLPQASYPCGNFSGTSC*KTLYTK 598
           N+  N W   A Y   ++SGT   KT +T+
Sbjct: 422 NIFCNIWSDNADYISLSYSGTGALKTDFTR 451


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 163 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 41
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 312 PNVRNCGSSRTEQYYYRNDKPSVG 383
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,803
Number of Sequences: 5004
Number of extensions: 49685
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)