Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0335
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   4.5  
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   7.9  

>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRE 185
           RPSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 93  RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 340 REEPQFRTFGSCTRPSGRWCEATIRGIMPNASKAEASLA 224
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTGF--HAAKADAEAA 288


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 399 SRRSNPAHVPF*WVNNPTLGEFCFAMIRKSRHRRIKRTSL*TLGCHKPVIPVVTFL 566
           SR + P+     ++   +   FCF++IR S +R+I  TS+  L      + + T+L
Sbjct: 121 SRATLPSSETLSFITESSDDLFCFSVIRNSTNRKIFDTSIGGLVFSDQFLQLATYL 176


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -2

Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 137
           RPSG WC     G     + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,753
Number of Sequences: 27780
Number of extensions: 284560
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)