Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0334
         (478 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.36 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   2.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.7  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 386 IVGEPAF*KTPVNIKILSRCSSVSVEVGRQFYFEQ 282
           +  EPA    PV+IK+ +R SS+  +    F F Q
Sbjct: 71  LCSEPAIWPKPVHIKLTNRESSIIDKTKISFNFSQ 105


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 276 SAQSGLKSCLNIS 238
           S+Q G K+CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 289 LNKLECSKRAKKLLEYFVHGIIEYDLGSI 203
           L+ L+ ++  K LLE      + Y+LG +
Sbjct: 387 LSLLQVAQIFKNLLENHYEEFVRYELGEL 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,176
Number of Sequences: 336
Number of extensions: 2119
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)